Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g01154 | ATGGATTTTCCAATACCAGAACCATCCCCTTCTGAAACTTCAACAATCATCTCTGCTTCAGAGTCTTCTCCACCATGTCCAAAGGGGGATCGAATAACAGACCAAATTAACCCTAATTCTCAACTGGGTTTGGATCTGAGCCTTTCTAATAAAGATTCCGATCATGGGTCGAACCCAGAACTCAATCTAATCGACTGTTTCGATGTGAATTTAACAACAGAACCTACAGATACAGAAACAGAGCCCAGGGTTTTCTCTTGCAACTATTGCCAGAGGAAATTTTACAGTTCTCAAGCTCTTGGGGGACACCAAAATGCCCACAAGCGAGAGAGGACTTTAGCAAAGAGGACTCAACGGGTCGGGTCGGCCTCTAATTTCGGGCTTGCTCATCGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTCAGTAGGTCGCTTGGAATTCAAGCTCATTCCATGGTTCATAAGCCTTCTTCTCTTCATGTTTCTGCAATTGGGTCATCTGGAATTTATGGTCACAGTGGATGGTCAAGGCAGCCGCTCGATCAACACCCGGCGATTGGCCGGTTGATGCAGGGAAATTCCCACGTTGGAAGTCTTAGAGGCATTTCGTCGAACACCGGAGCTGCAAGGTTTCAGGGTGTGAAGAAATTCTCTCCGGCGGCAGACACGGAGGCGCCACCGCCTCTCGGAGGGTTCTGGTGGGATGGCGGCGGTGGTGGTGGTTTTAGTCATCTGAAGATGAAGCCTAAACAAGATGAGTTGTTGAAGCTTGACTTGTCTCTTAAGCTCTAA | 801 | 47.94 | MDFPIPEPSPSETSTIISASESSPPCPKGDRITDQINPNSQLGLDLSLSNKDSDHGSNPELNLIDCFDVNLTTEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRVGSASNFGLAHRYSSLASLPLHGSFSRSLGIQAHSMVHKPSSLHVSAIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSLRGISSNTGAARFQGVKKFSPAADTEAPPPLGGFWWDGGGGGGFSHLKMKPKQDELLKLDLSLKL | 266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 28494771 | 28495571 | + | ClCG07G012130.1 | Cla07g01154 | 277142 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g01154 | 266 | PANTHER | ZINC FINGER PROTEIN 1-LIKE | 1 | 266 | - | - | |
| Cla07g01154 | 266 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cla07g01154 | 266 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 107 | IPR013087 | - | |
| Cla07g01154 | 266 | SUPERFAMILY | beta-beta-alpha zinc fingers | 81 | 112 | IPR036236 | - | |
| Cla07g01154 | 266 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 85 | 112 | IPR013087 | - | |
| Cla07g01154 | 266 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
| Cla07g01154 | 266 | Gene3D | Classic Zinc Finger | 66 | 130 | - | - | |
| Cla07g01154 | 266 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 1 | 266 | IPR044246 | GO:0009788 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g01108 | Cla-Chr5:11491328 | Cla07g01154 | Cla-Chr7:28494771 | 7.58E-25 | dispersed | |
| Cla05g01696 | Cla-Chr5:28710268 | Cla07g01154 | Cla-Chr7:28494771 | 7.98E-26 | dispersed | |
| Cla07g01154 | Cla-Chr7:28494771 | Cla09g00291 | Cla-Chr9:2822773 | 3.56E-33 | dispersed | |
| Cla01g00655 | Cla-Chr1:7676874 | Cla07g01154 | Cla-Chr7:28494771 | 1.10E-28 | transposed | |
| Cla05g01119 | Cla-Chr5:11716579 | Cla07g01154 | Cla-Chr7:28494771 | 3.32E-30 | transposed | |
| Cla06g01318 | Cla-Chr6:26560306 | Cla07g01154 | Cla-Chr7:28494771 | 8.76E-17 | transposed | |
| Cla11g00098 | Cla-Chr11:1300990 | Cla07g01154 | Cla-Chr7:28494771 | 1.39E-31 | transposed | |
| Cla11g01272 | Cla-Chr11:26252998 | Cla07g01154 | Cla-Chr7:28494771 | 3.36E-21 | transposed | |
| Cla07g01154 | Cla-Chr7:28494771 | Cla08g01360 | Cla-Chr8:26436318 | 2.35E-37 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61450 | None | None | None | None | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g01154 | - | - | csv:101205862 | 429.483 |