Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g01182 | ATGGCAAGACCTCAACAACGCTATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCGGAAGACGCCGCCAGAGCATATGACGAAGCAGCTACAATTATGTGTTGCCCTAACAATCTCCCAACCAATCACAGTGCGCCACCTCACCTCTCGTCGGCGCCGCCGTCGTCTAAGCTTCTAACTCCCACTTTGATCGACAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCAATTCGCCCTCCGGAAATCCGCCGACCCAACTCACCGTCCGGCCACCAAACTCCACGACGGTCACTGGTCGGAAACAGAGGTCAAGTGGGTCGCCGGTGGGGAGGCTGAGGAGGTCCGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTTGGTTCTACAAATAATTAG | 531 | 52.17 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNHSAPPHLSSAPPSSKLLTPTLIDKLQRCRMASLQMTKTQFALRKSADPTHRPATKLHDGHWSETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTNN | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 28806666 | 28808019 | - | ClCG07G012410.1 | Cla07g01182 | 277170 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g01182 | 176 | SUPERFAMILY | DNA-binding domain | 7 | 56 | IPR016177 | GO:0003677 | |
Cla07g01182 | 176 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01182 | 176 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01182 | 176 | CDD | AP2 | 6 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01182 | 176 | Pfam | AP2 domain | 7 | 51 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01182 | 176 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01182 | 176 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 165 | - | - | |
Cla07g01182 | 176 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cla07g01182 | 176 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 165 | - | - | |
Cla07g01182 | 176 | SMART | rav1_2 | 7 | 67 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01700 | Cla-Chr5:28752470 | Cla07g01182 | Cla-Chr7:28806666 | 1.88E-50 | dispersed | |
Cla07g01182 | Cla-Chr7:28806666 | Cla09g00288 | Cla-Chr9:2794654 | 4.17E-47 | dispersed | |
Cla07g01182 | Cla-Chr7:28806666 | Cla08g01357 | Cla-Chr8:26394613 | 1.60E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61452 | PF00847 | AP2 | 4.00E-11 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g01182 | - | - | csv:101207788 | 277.715 |