Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01182 ATGGCAAGACCTCAACAACGCTATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCGGAAGACGCCGCCAGAGCATATGACGAAGCAGCTACAATTATGTGTTGCCCTAACAATCTCCCAACCAATCACAGTGCGCCACCTCACCTCTCGTCGGCGCCGCCGTCGTCTAAGCTTCTAACTCCCACTTTGATCGACAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCAATTCGCCCTCCGGAAATCCGCCGACCCAACTCACCGTCCGGCCACCAAACTCCACGACGGTCACTGGTCGGAAACAGAGGTCAAGTGGGTCGCCGGTGGGGAGGCTGAGGAGGTCCGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTTGGTTCTACAAATAATTAG 531 52.17 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNHSAPPHLSSAPPSSKLLTPTLIDKLQRCRMASLQMTKTQFALRKSADPTHRPATKLHDGHWSETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTNN 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28806666 28808019 - ClCG07G012410.1 Cla07g01182 277170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01182 176 SUPERFAMILY DNA-binding domain 7 56 IPR016177 GO:0003677
Cla07g01182 176 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cla07g01182 176 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cla07g01182 176 CDD AP2 6 55 IPR001471 GO:0003700|GO:0006355
Cla07g01182 176 Pfam AP2 domain 7 51 IPR001471 GO:0003700|GO:0006355
Cla07g01182 176 ProSiteProfiles AP2/ERF domain profile. 7 65 IPR001471 GO:0003700|GO:0006355
Cla07g01182 176 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 165 - -
Cla07g01182 176 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cla07g01182 176 PANTHER ETHYLENE RESPONSE FACTOR 1 165 - -
Cla07g01182 176 SMART rav1_2 7 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01700 Cla-Chr5:28752470 Cla07g01182 Cla-Chr7:28806666 1.88E-50 dispersed
Cla07g01182 Cla-Chr7:28806666 Cla09g00288 Cla-Chr9:2794654 4.17E-47 dispersed
Cla07g01182 Cla-Chr7:28806666 Cla08g01357 Cla-Chr8:26394613 1.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61452 PF00847 AP2 4.00E-11 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01182 - - csv:101207788 277.715