Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01184 ATGGCCCTTCGCCCTTTCTTCTGCTGTGGAATTGGTTCGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCGTTGAAGGAATTACACTCGGCCACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGCGTTTACTGGGGTCAGCTGTGGGATGGATCACAAATAGCAGTTAAAAGGTTGAAGGTCTGGAGCAACAAAGCAGACATGGAATTTTCTGTGGAAGTTGAAATACTGGCCCGAGTTAGGCACAAGAATCTATTGAGTTTACGTGGCTACTGTGCTGAAGGGCAAGAGCGCTTGATTGTGTATGACTACATGCCCAATCTAAGTCTACTCTCCCATCTACATGGACATCACTCATCAGAATGCCATCTTGATTGGAAACGTCGTATGAAAATCGCTATTGGGTCTGCCGAGGGAATTGCCTATCTTCACCACCAAGCAACTCCACATATCATTCATCGAGACATCAAAGCTAGTAATGTTTTGCTGGATCCAGATTTCCAAGCTCGAGTAGCTGACTTTGGATTCGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTTGCTCCTGAATATGCTATGTTAGGTAAGGCATCAGAGAGTTGTGACGTATACAGTTTTGGCATTCTCCTGCTTGAGCTTGCTACCGGCAAGAAGCCTCTTGAGAAATTGAGTGCAACAATGAAACGCACAATCATAGATTGGGCACTACCGATTGTAGTTGAGAAAAAAATTGACGAACTTGCAGACCCGAAGCTAAATGGAGACTATAACGCAGACGAACTAAAGAGAGTCGTCCTTGTTGCGCTCTGTTGTTCCCATTCACGACCTGAGAAACGACCGACCATGCTCGAGGTGGTTGAGCTGCTAAAAGGAGAATCAAAAGAGAAGCTGGCCAAATTAGAAGATGATGAGCTGTTCAAGAGCCATCAAGTAGCTGCACAAACTACAGAAATACAAGCTGGTGAAGATAGCTCAGACTTCATATCAGAAGAAAAGGATTCAAAAGAGAAGGAGAAAGAGAATTCATCACAAAACCCCACATGA 1110 44.14 MALRPFFCCGIGSDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECHLDWKRRMKIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTIIDWALPIVVEKKIDELADPKLNGDYNADELKRVVLVALCCSHSRPEKRPTMLEVVELLKGESKEKLAKLEDDELFKSHQVAAQTTEIQAGEDSSDFISEEKDSKEKEKENSSQNPT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28822190 28825589 - ClCG07G012430.1 Cla07g01184 277172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01184 369 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01184 369 PANTHER OS01G0750732 PROTEIN 1 366 - -
Cla07g01184 369 Gene3D Phosphorylase Kinase; domain 1 12 115 - -
Cla07g01184 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Cla07g01184 369 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Cla07g01184 369 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01184 369 MobiDBLite consensus disorder prediction 347 369 - -
Cla07g01184 369 MobiDBLite consensus disorder prediction 335 369 - -
Cla07g01184 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Cla07g01184 369 Coils Coil 305 325 - -
Cla07g01184 369 PANTHER BNAA05G14800D PROTEIN 1 366 - -
Cla07g01184 369 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Cla07g01184 369 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01184 369 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02279 Cla-Chr1:36666684 Cla07g01184 Cla-Chr7:28822190 3.25E-48 dispersed
Cla03g00394 Cla-Chr3:4515225 Cla07g01184 Cla-Chr7:28822190 3.58E-66 dispersed
Cla05g00833 Cla-Chr5:8234347 Cla07g01184 Cla-Chr7:28822190 1.29E-147 dispersed
Cla06g01298 Cla-Chr6:26329847 Cla07g01184 Cla-Chr7:28822190 3.25E-143 dispersed
Cla07g01184 Cla-Chr7:28822190 Cla05g02353 Cla-Chr5:35102124 2.21E-92 dispersed
Cla11g01200 Cla-Chr11:25119407 Cla07g01184 Cla-Chr7:28822190 8.56E-72 dispersed
Cla07g01184 Cla-Chr7:28822190 Cla11g00221 Cla-Chr11:2548037 4.96E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80696 PF00069 Pkinase 7.10E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01184 - - csv:101212993 684.1