Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01210 ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACGGCCGAAGACGCGGCTCGAGCCTACGATGAGGCCGCCGTTCTCATGAGTGGTCGAACTGCAAAAACCAACTTTCCAATGTCGACTGCCCTTGTTCAAAACGATGCTAGAAATATTCCTCCATTTTCGTCATTGTCGACAATTCTCAACACTAAACTTCGCAAGTGTTGGAAATCTTTTCCTCCTTCTCTAACTTGCCTTCGTCTCGACGCCGAGAGTTGTCGCATTGGCGTTTGGCAGAGGCGTGCAGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAGAAGAACGACGGATTCCAAGTAACGGACGAGTCGCCGAAAAAGGGTGCGGAAGATCAGGTGAGACTTTCAGATGGGGCAGAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTGCAAATGATTGAAGAACTTTTGAATAAGATATGA 564 48.76 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPMSTALVQNDARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDGFQVTDESPKKGAEDQVRLSDGAESLDEEERAALQMIEELLNKI 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29109838 29110675 + ClCG07G012670.1 Cla07g01210 277198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01210 187 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cla07g01210 187 Coils Coil 166 186 - -
Cla07g01210 187 MobiDBLite consensus disorder prediction 143 167 - -
Cla07g01210 187 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Cla07g01210 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cla07g01210 187 PANTHER ETHYLENE RESPONSE FACTOR 1 186 - -
Cla07g01210 187 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cla07g01210 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cla07g01210 187 Pfam AP2 domain 7 51 IPR001471 GO:0003700|GO:0006355
Cla07g01210 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cla07g01210 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cla07g01210 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01741 Cla-Chr5:29243958 Cla07g01210 Cla-Chr7:29109838 3.26E-46 dispersed
Cla07g01210 Cla-Chr7:29109838 Cla08g01357 Cla-Chr8:26394613 3.26E-30 dispersed
Cla11g00279 Cla-Chr11:3216107 Cla07g01210 Cla-Chr7:29109838 4.82E-62 wgd
Cla06g01112 Cla-Chr6:23898441 Cla07g01210 Cla-Chr7:29109838 4.47E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61453 PF00847 AP2 4.60E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01210 - - csv:101211468 284.648