Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g01221 | ATGTCTTTCCAGCTTTTAAGTAGTCAATCTTGTATATCTGCTTATGTATATACTCGTAGAATTCAGTGGAGGTTGAATCCTGTCCAGGCCGTACCACCATCATCAACTCTTTTGTACACTGATGAAAGTGAACATTTTCCAGAATCTAAGAAGAGTTCTGGCTTCAGCTCAGTATTGAAAACAAGTAAAGATTCATCTGGTATTTTGCTAAGTCAATCAAATACAGTGGGTATATTAGGAGGATCATCCGTGAATTCTACTTTAAACTTCTTGGGAAAATTAGTTAAATGGAGTACAAAAGATGGACAATCTGGTCTTCCTTTTGTTCTTTGCTCTGACCCAACTCTTAGTAAGGAGCTCCAAGTGTTTGATAGAAGTTCTCACCCAGTTCTCAACGGCAAGAGTGAGGAATTGGGGTTGGATTGTGGTTTAGTAGTGGAGTGTTTGAAGAGTAAGAGGGCTTTTCTCGAGAATTCGGGTGCTCGTTGCATTGTTATGCCTTGTCACATCTCTCATTTATGGTATGAAGATGTTTCAAAAGGGTGTCCTGTTACCTTCCTTCACATGGCTGATTGTGTTGCTAGAGAGCTCAAGGAAGCTAAGTTGAAGCCACTCGAAGCTGGGAGTCCCTTAAGGATTGGAGTTCTTGCAACTAATGCAATTTTAAGTGCAGGGTACTATCAGGAGAAACTGCAGAATGAAGGATTTGAGGTGGTTCTTCCAGACAAAGCAACTATGGAACATACTATAATTCCTGCAATTGAGGCTCTAAACAGAAAAGATATAGAAGGGGCAAGGAATTTACTAAGAATTGCACTTCAAGTTCTTCTGGTGAGGGCTGTCAACTCTGTCATCCTTGCCTCTGATGAGATAAAGGATCTTTTGCCCTTGGATGATCCCCTTCTTAAGAAATGTATTGACCCAATGGACGCATTAGCAAGGTCCACTATCAATTGGGCACAATGTGCTGAATAA | 975 | 40.72 | MSFQLLSSQSCISAYVYTRRIQWRLNPVQAVPPSSTLLYTDESEHFPESKKSSGFSSVLKTSKDSSGILLSQSNTVGILGGSSVNSTLNFLGKLVKWSTKDGQSGLPFVLCSDPTLSKELQVFDRSSHPVLNGKSEELGLDCGLVVECLKSKRAFLENSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVARELKEAKLKPLEAGSPLRIGVLATNAILSAGYYQEKLQNEGFEVVLPDKATMEHTIIPAIEALNRKDIEGARNLLRIALQVLLVRAVNSVILASDEIKDLLPLDDPLLKKCIDPMDALARSTINWAQCAE | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 29186958 | 29188883 | + | ClCG07G012790.1 | Cla07g01221 | 277209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g01221 | 324 | SUPERFAMILY | Aspartate/glutamate racemase | 212 | 320 | IPR001920 | GO:0016855 | |
| Cla07g01221 | 324 | Pfam | Asp/Glu/Hydantoin racemase | 79 | 315 | IPR015942 | GO:0006807|GO:0036361 | |
| Cla07g01221 | 324 | Gene3D | - | 191 | 308 | - | - | |
| Cla07g01221 | 324 | PANTHER | ASPARTATE-GLUTAMATE RACEMASE FAMILY | 1 | 323 | IPR004380 | GO:0047661 | |
| Cla07g01221 | 324 | SUPERFAMILY | Aspartate/glutamate racemase | 75 | 199 | IPR001920 | GO:0016855 | |
| Cla07g01221 | 324 | PANTHER | GLUTAMATE RACEMASE | 1 | 323 | - | - | |
| Cla07g01221 | 324 | Gene3D | - | 75 | 314 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla07g01221 | Cla09g00243 | CCT | |
| Cla07g01221 | Cla09g00243 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla09g01358 | Cla-Chr9:22330590 | Cla07g01221 | Cla-Chr7:29186958 | 3.78E-33 | transposed | |
| Cla06g01086 | Cla-Chr6:23479777 | Cla07g01221 | Cla-Chr7:29186958 | 2.72E-106 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g01221 | - | - | csv:101217164 | 581.252 |