Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g01251 | ATGGAGGAGGTGGACGACGGTAGCGGTGGAGCGCGGAGAGATGATACGGCGGCGGAAGTTAGTAGCGAGAATTCGGGACCAGTGAGGTCGAGATCGGACGACGACGGTTTCGACGGCGGAGGAGCGCACGACGAGAATGAAGATGGGATGGACCATGGGTGTCCTGTAAAGAGAAGGAAGAAATATCATCGACATACAACCGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCAGATGAGAAGCAAAGGCAACAGCTTAGCAAGCGATTAGGACTTTCGCCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACTCAAATCAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAATTAAAGGAATGAGAGAAATTTGTAGGAAAAAAGTTGGTTGTCCAAACTGTGGGACGGCCGACGCCGGTGAAGACCACGTCGCTTTTACAACCACGGAGCAATTGCGTATTAAGAACGCCAAACTCAAAGCCGAGGTTGAGAAACTACGAGCGGCACTGGGAAAATACCCAAAAGCAGCGGCGTCTCCTTCATATTCATCAGGGAACGAGCAAGAGACGAGGAAGCGAAGCTGCTTAGATTTTTACACAGGAATTTTTGGGGTTGAAAAGTCCAGGATGATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTACAGTCGGCGACCCACTATGGGTCCGCAGCGTGGAGAGCGGAAGACAGATATTAAACTACGATGAGTACTTGAAAACCTTCCATTTCAACAATAATAATAATTCCAACACTCGTTCCCTCAAAACACACATTGAAGCCTCACGTGAGACTGCCCTTGTTTTCATGGACCCCTCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCCAAGGCAGCTACGGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTTGAATAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTTACACCATTAGTTCCCACGAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCCGAACAATGGGCGATAGTCGATGTTTCGATTGAAAACATTGAAGATAACAATAATATCGATGCATCATTGGTAAAATACAGAAAACGTCCATCTGGTTGCATCATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAACAAAGTTCACAACTTGTATAGAAACATAGTGAACAATGGCACTGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAATTGGAGTTGCAACACTAGCTGGAAGAAAAAGCACATTAAAGTTGGCTCAGAGAATGAGTTCAAGCTTCTCCCAAGCAATTGCAGCTTCAAGTTATCAAACATGGACCAAAGTTGTGGGGAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTTAGTGACCCTGGTGAGCCCATTGGAGTCATCTTGTGTGCAGTTTCTTCTCTTTGGTTGCCTCTTTCTCCCCATCTTCTCTTTGATTTTTTCAGAGATGAATCTCGTCGAAATCAGTGGGACGCCATGTTTGGTGGAGATAAAGTTAAGTCCATTGCAAATTTAGCTAAAGGACAGGATCGAGGCAACTCAGTTACCATTCAAACAATAGGATCAAAAGAGAGCAACAACATGTGGATCCTACAAGACAGCTCCACAAACTCATCGGAATCCATGGTGGTATACTCTGGAGTAGACATTAGCAGCATGCAGTCAGTGATGTCTGGTTGTGATTCCGGCAGCGTCGCCATCCTCCCTTCAGGCTTTTCAATTCTCCCCGACGGCGCCGACTCCCGGCCGCCCCTCCTCATCACTCGTCGTAAAGACGACAAAGCTTCCGACAATCATGGCGGCGTTCTACTCACCGCGGCGGTCCAAATCCTCACCGATACGTCTCCCTCTGCAAAACCCACCATGGAATCCATTGACCTGCAACTCCAAATTTGTTCCTTTTCAAAGCAAAAGGCACTAAGGCAGGCAACAATGGCTTCCTTAGCAACATTAGCCGCCGTTCAACCGGTCACCGTAAAGGGCCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCACTCAGGCCTTCTCGCCAGACCTTCAGACCAAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAAGATTTGGGCAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATCCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACAAGGAGAGGATTGTTGCTCAAGTTCTTGATACTAGGTGGTGGTGCCACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATCAAGAAAGGACCTCAACTTCCACCAAAACTTGGGCCGCGTGGCAAGATCTAA | 2598 | 46.34 | MEEVDDGSGGARRDDTAAEVSSENSGPVRSRSDDDGFDGGGAHDENEDGMDHGCPVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREEIKGMREICRKKVGCPNCGTADAGEDHVAFTTTEQLRIKNAKLKAEVEKLRAALGKYPKAAASPSYSSGNEQETRKRSCLDFYTGIFGVEKSRMMEKVDEAVEELKTMATVGDPLWVRSVESGRQILNYDEYLKTFHFNNNNNSNTRSLKTHIEASRETALVFMDPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANLNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENIEDNNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKNKVHNLYRNIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSIGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRNQWDAMFGGDKVKSIANLAKGQDRGNSVTIQTIGSKESNNMWILQDSSTNSSESMVVYSGVDISSMQSVMSGCDSGSVAILPSGFSILPDGADSRPPLLITRRKDDKASDNHGGVLLTAAVQILTDTSPSAKPTMESIDLQLQICSFSKQKALRQATMASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTRRGLLLKFLILGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI | 865 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 29523587 | 29534646 | - | ClCG07G013150.2 | Cla07g01251 | 277239 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g01251 | 865 | ProSiteProfiles | START domain profile. | 221 | 463 | IPR002913 | GO:0008289 | |
Cla07g01251 | 865 | Gene3D | - | 248 | 459 | IPR023393 | - | |
Cla07g01251 | 865 | SUPERFAMILY | Homeodomain-like | 46 | 117 | IPR009057 | - | |
Cla07g01251 | 865 | Pfam | START domain | 233 | 460 | IPR002913 | GO:0008289 | |
Cla07g01251 | 865 | Pfam | Homeodomain | 59 | 114 | IPR001356 | GO:0003677 | |
Cla07g01251 | 865 | CDD | homeodomain | 59 | 114 | IPR001356 | GO:0003677 | |
Cla07g01251 | 865 | SMART | HOX_1 | 58 | 120 | IPR001356 | GO:0003677 | |
Cla07g01251 | 865 | ProSiteProfiles | 'Homeobox' domain profile. | 56 | 116 | IPR001356 | GO:0003677 | |
Cla07g01251 | 865 | SUPERFAMILY | Bet v1-like | 224 | 461 | - | - | |
Cla07g01251 | 865 | Coils | Coil | 167 | 187 | - | - | |
Cla07g01251 | 865 | ProSitePatterns | 'Homeobox' domain signature. | 91 | 114 | IPR017970 | GO:0000981|GO:0006355 | |
Cla07g01251 | 865 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 13 | 708 | IPR042160 | - | |
Cla07g01251 | 865 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cla07g01251 | 865 | Coils | Coil | 115 | 142 | - | - | |
Cla07g01251 | 865 | Gene3D | - | 819 | 841 | - | - | |
Cla07g01251 | 865 | MobiDBLite | consensus disorder prediction | 28 | 55 | - | - | |
Cla07g01251 | 865 | CDD | START_ArGLABRA2_like | 225 | 459 | - | - | |
Cla07g01251 | 865 | Pfam | Photosystem I reaction centre subunit VI | 728 | 865 | IPR004928 | GO:0009522|GO:0009538|GO:0015979 | |
Cla07g01251 | 865 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 | 13 | 708 | - | - | |
Cla07g01251 | 865 | SUPERFAMILY | Bet v1-like | 483 | 657 | - | - | |
Cla07g01251 | 865 | SMART | START_1 | 229 | 460 | IPR002913 | GO:0008289 | |
Cla07g01251 | 865 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Cla07g01251 | 865 | Gene3D | - | 46 | 129 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g01251 | Cla-Chr7:29523587 | Cla05g00862 | Cla-Chr5:8530092 | 1.02E-166 | dispersed | |
Cla07g01251 | Cla-Chr7:29523587 | Cla09g00177 | Cla-Chr9:1816555 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61456 | PF01852 | START | 1.30E-54 | CL0209 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g01251 | K09338 | - | csv:101221341 | 1197.96 |