Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01251 ATGGAGGAGGTGGACGACGGTAGCGGTGGAGCGCGGAGAGATGATACGGCGGCGGAAGTTAGTAGCGAGAATTCGGGACCAGTGAGGTCGAGATCGGACGACGACGGTTTCGACGGCGGAGGAGCGCACGACGAGAATGAAGATGGGATGGACCATGGGTGTCCTGTAAAGAGAAGGAAGAAATATCATCGACATACAACCGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCAGATGAGAAGCAAAGGCAACAGCTTAGCAAGCGATTAGGACTTTCGCCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACTCAAATCAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAATTAAAGGAATGAGAGAAATTTGTAGGAAAAAAGTTGGTTGTCCAAACTGTGGGACGGCCGACGCCGGTGAAGACCACGTCGCTTTTACAACCACGGAGCAATTGCGTATTAAGAACGCCAAACTCAAAGCCGAGGTTGAGAAACTACGAGCGGCACTGGGAAAATACCCAAAAGCAGCGGCGTCTCCTTCATATTCATCAGGGAACGAGCAAGAGACGAGGAAGCGAAGCTGCTTAGATTTTTACACAGGAATTTTTGGGGTTGAAAAGTCCAGGATGATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTACAGTCGGCGACCCACTATGGGTCCGCAGCGTGGAGAGCGGAAGACAGATATTAAACTACGATGAGTACTTGAAAACCTTCCATTTCAACAATAATAATAATTCCAACACTCGTTCCCTCAAAACACACATTGAAGCCTCACGTGAGACTGCCCTTGTTTTCATGGACCCCTCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCCAAGGCAGCTACGGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTTGAATAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTTACACCATTAGTTCCCACGAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCCGAACAATGGGCGATAGTCGATGTTTCGATTGAAAACATTGAAGATAACAATAATATCGATGCATCATTGGTAAAATACAGAAAACGTCCATCTGGTTGCATCATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAACAAAGTTCACAACTTGTATAGAAACATAGTGAACAATGGCACTGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAATTGGAGTTGCAACACTAGCTGGAAGAAAAAGCACATTAAAGTTGGCTCAGAGAATGAGTTCAAGCTTCTCCCAAGCAATTGCAGCTTCAAGTTATCAAACATGGACCAAAGTTGTGGGGAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTTAGTGACCCTGGTGAGCCCATTGGAGTCATCTTGTGTGCAGTTTCTTCTCTTTGGTTGCCTCTTTCTCCCCATCTTCTCTTTGATTTTTTCAGAGATGAATCTCGTCGAAATCAGTGGGACGCCATGTTTGGTGGAGATAAAGTTAAGTCCATTGCAAATTTAGCTAAAGGACAGGATCGAGGCAACTCAGTTACCATTCAAACAATAGGATCAAAAGAGAGCAACAACATGTGGATCCTACAAGACAGCTCCACAAACTCATCGGAATCCATGGTGGTATACTCTGGAGTAGACATTAGCAGCATGCAGTCAGTGATGTCTGGTTGTGATTCCGGCAGCGTCGCCATCCTCCCTTCAGGCTTTTCAATTCTCCCCGACGGCGCCGACTCCCGGCCGCCCCTCCTCATCACTCGTCGTAAAGACGACAAAGCTTCCGACAATCATGGCGGCGTTCTACTCACCGCGGCGGTCCAAATCCTCACCGATACGTCTCCCTCTGCAAAACCCACCATGGAATCCATTGACCTGCAACTCCAAATTTGTTCCTTTTCAAAGCAAAAGGCACTAAGGCAGGCAACAATGGCTTCCTTAGCAACATTAGCCGCCGTTCAACCGGTCACCGTAAAGGGCCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCACTCAGGCCTTCTCGCCAGACCTTCAGACCAAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAAGATTTGGGCAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATCCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACAAGGAGAGGATTGTTGCTCAAGTTCTTGATACTAGGTGGTGGTGCCACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATCAAGAAAGGACCTCAACTTCCACCAAAACTTGGGCCGCGTGGCAAGATCTAA 2598 46.34 MEEVDDGSGGARRDDTAAEVSSENSGPVRSRSDDDGFDGGGAHDENEDGMDHGCPVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREEIKGMREICRKKVGCPNCGTADAGEDHVAFTTTEQLRIKNAKLKAEVEKLRAALGKYPKAAASPSYSSGNEQETRKRSCLDFYTGIFGVEKSRMMEKVDEAVEELKTMATVGDPLWVRSVESGRQILNYDEYLKTFHFNNNNNSNTRSLKTHIEASRETALVFMDPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANLNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENIEDNNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKNKVHNLYRNIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSIGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRNQWDAMFGGDKVKSIANLAKGQDRGNSVTIQTIGSKESNNMWILQDSSTNSSESMVVYSGVDISSMQSVMSGCDSGSVAILPSGFSILPDGADSRPPLLITRRKDDKASDNHGGVLLTAAVQILTDTSPSAKPTMESIDLQLQICSFSKQKALRQATMASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTRRGLLLKFLILGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29523587 29534646 - ClCG07G013150.2 Cla07g01251 277239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01251 865 ProSiteProfiles START domain profile. 221 463 IPR002913 GO:0008289
Cla07g01251 865 Gene3D - 248 459 IPR023393 -
Cla07g01251 865 SUPERFAMILY Homeodomain-like 46 117 IPR009057 -
Cla07g01251 865 Pfam START domain 233 460 IPR002913 GO:0008289
Cla07g01251 865 Pfam Homeodomain 59 114 IPR001356 GO:0003677
Cla07g01251 865 CDD homeodomain 59 114 IPR001356 GO:0003677
Cla07g01251 865 SMART HOX_1 58 120 IPR001356 GO:0003677
Cla07g01251 865 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Cla07g01251 865 SUPERFAMILY Bet v1-like 224 461 - -
Cla07g01251 865 Coils Coil 167 187 - -
Cla07g01251 865 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Cla07g01251 865 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 708 IPR042160 -
Cla07g01251 865 MobiDBLite consensus disorder prediction 1 19 - -
Cla07g01251 865 Coils Coil 115 142 - -
Cla07g01251 865 Gene3D - 819 841 - -
Cla07g01251 865 MobiDBLite consensus disorder prediction 28 55 - -
Cla07g01251 865 CDD START_ArGLABRA2_like 225 459 - -
Cla07g01251 865 Pfam Photosystem I reaction centre subunit VI 728 865 IPR004928 GO:0009522|GO:0009538|GO:0015979
Cla07g01251 865 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 13 708 - -
Cla07g01251 865 SUPERFAMILY Bet v1-like 483 657 - -
Cla07g01251 865 SMART START_1 229 460 IPR002913 GO:0008289
Cla07g01251 865 MobiDBLite consensus disorder prediction 1 66 - -
Cla07g01251 865 Gene3D - 46 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01251 Cla-Chr7:29523587 Cla05g00862 Cla-Chr5:8530092 1.02E-166 dispersed
Cla07g01251 Cla-Chr7:29523587 Cla09g00177 Cla-Chr9:1816555 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61456 PF01852 START 1.30E-54 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01251 K09338 - csv:101221341 1197.96