Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01261 ATGGCGGAACCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGACGGATCGAGAACAGAGAGATCAGAAACACCCAATTTACAGAGGCGTACGGAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGGCAGCCGAGGAAGAAGTCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCAGCGCGTGCACACGACGTGGCGGCGCTCAGCATCAAAGGTGATTCAGCAAAGGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTTCCACGGCCGGTGTCCTTAATGCCGAGGGATATTCAGGAGGCGGCTGCCAAGGCGGCGGCCATGGTCGATTTCGATTCCACTACGGCGTCGTTTTCGTCGTTTAATGATGAAGAAGGGTCAGAGGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAAGATATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTTGCGGCCGGGGAATTGGATTTCTGTGCGGTGTTTTCAGATCAGAGTACTACTCCGGTTACCTTCGACGGCGGCGATTGGGAGTGA 612 52.12 MAEPNNWNSESESTEMKRGKQTDREQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSTTASFSSFNDEEGSEELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFAAGELDFCAVFSDQSTTPVTFDGGDWE 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29684996 29685607 - ClCG07G013270.2 Cla07g01261 277249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01261 203 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Cla07g01261 203 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700|GO:0006355
Cla07g01261 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 197 - -
Cla07g01261 203 SMART rav1_2 33 98 IPR001471 GO:0003700|GO:0006355
Cla07g01261 203 MobiDBLite consensus disorder prediction 13 32 - -
Cla07g01261 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TINY-LIKE 12 197 - -
Cla07g01261 203 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677
Cla07g01261 203 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Cla07g01261 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Cla07g01261 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Cla07g01261 203 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Cla07g01261 203 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01261 Cla-Chr7:29684996 Cla11g01484 Cla-Chr11:28476465 3.60E-49 dispersed
Cla11g00204 Cla-Chr11:2372697 Cla07g01261 Cla-Chr7:29684996 7.38E-46 wgd
Cla07g01261 Cla-Chr7:29684996 Cla09g00162 Cla-Chr9:1696022 2.92E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61458 PF00847 AP2 9.40E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01261 K09286 - csv:101222354 363.229