Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01272 ATGCACAGAATCGCCGGTTCACGACTCAGGTCGCTCAAGAACCATGCGGCCAATTTGGGGGCCTCTAGATTTGCAACATCCAGTGCAGTTGCTGCAAGACCAACGTCTGGAGGGTTTTTTAGCTGGCTCACTGGAGAACGTTCAAGCTCTCTTCCCCCATTGGAAACACCACTATCTGGTATTACCCTCCCACCACCATTGCCTGATCACGTTGAACCAAGCAAGACCAAGATTACAACTCTTCCTAATGGTGTCAGAATAGCTTCAGAAACTTCTTCGAACCCTGCAGCCTCTATTGGGATATATCTTGATTGTGGTTCCATATATGAGACCCCAGTGTCTTCCGGAGCATCACATTTGCTGGAAAGGTTGGCCTTCAAGAGCACAACAAATCGAAGCCATTTGCGCATTGTTAGGGAAGTAGAAGCTATTGGTGGCAACACAGGTGCCTCTGCCTCCCGGGAGCAAATGGGATACACTTTTGATGCTTTAAAGACATATGTTCCAGAAATGGTGGAATTGCTAGTAGACTGTGTCAGGAATCCTGTATTTTTGGATTGGGAAATCAATGAAGAGCTGCAAAAGCTAAAAGCAGAAATTGGAGAACTTGCAAATAACCCCCAGGGCTTACTTCTCGAGGCAATTCATTCTGCTGGGTATTCTGGGGCACTTGCAAATCCTCTTGTGGCTCCAGAGTTTGCATTAAGCAGATTGGATGGCACCATCTTGGAGGAATTTATTGCTGAGAACTATACTGCTCCTAGAATGGTGCTTGCAGCATCAGGGGTTGAACATGAGGAGCTTTTATCCATTGCAGAACCTCTTCTATCTGACCTACCCAAAGTACCCATTGTGAGAGTGCCGGAATCTGCATATGTTGGAGGGGATTATCGTCGTCAAGCTGACTGCGTTTCATTTGAGCAGAGCACACATGTTGCCCTGGCTTTTGAGGTTCCTGGTGGCTGGCACAAGGAGAAAGATGCCATTGTTTTGACGGTTCTTCAGATGCTTATGGGAGGTGGTGGTTCATTTTCTGCTGGGGGCCCTGGTAAAGGCATGCACTCGAGGTTATATCTCCGTGTTTTGAATGAGTACCAGCAGATTCAATCTTTTTCTGCATTTAACAGCATCTTCAATAACACGGGACTGTTTGGAATTTATGCTAGCACTGGTTCTGACTTTGTGGCCCAAGCAGTTGATATTGCTGCATCAGAACTAATCTCAATTGCAACTCCTGGACAAGTTTCCCAGGTGCAGCTTAACCGTGCCAAAGAATCAACAAAATCTGCAGTTTTGATGAATCTAGAGTCCAGGATGATCGTGTCTGAGGATATTGGGAGGCAGATTTTGACATATGGAGAAAGGAAACCTGTAGAGCACTTCTTAAAGGCCGTAGACTCAATCACTTTGAACGATATTACTAACATTGCCCAGAAAGTTATATCTTCTCCTTTAACGATGGCATCATACGGAGACGTTATTAATGTCCCAACCTACGAGTCTGTTAACAGCAGAGAAGTGAGAGCGAAGAAACCACAACCAAAACAGAGAAGGGAAAATTTCAGAGGGAATTTCTTTGATTCATTAACTCGGCGAAGATCGAAAATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCCAACATCTCAAAGCCGCTGCTATAATCGGTAACGACGGTTCTATTTGGGCTCAGAGCACCGGTTTCCCTCAGTACAAGCCAGAAGAGATTACTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCTCCGACTGGGTTGCACCTTGGTGGATCGAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGATCACTGTAAAGAAAACAAACCAAGCACTGATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTGTAA 2001 45.38 MHRIAGSRLRSLKNHAANLGASRFATSSAVAARPTSGGFFSWLTGERSSSLPPLETPLSGITLPPPLPDHVEPSKTKITTLPNGVRIASETSSNPAASIGIYLDCGSIYETPVSSGASHLLERLAFKSTTNRSHLRIVREVEAIGGNTGASASREQMGYTFDALKTYVPEMVELLVDCVRNPVFLDWEINEELQKLKAEIGELANNPQGLLLEAIHSAGYSGALANPLVAPEFALSRLDGTILEEFIAENYTAPRMVLAASGVEHEELLSIAEPLLSDLPKVPIVRVPESAYVGGDYRRQADCVSFEQSTHVALAFEVPGGWHKEKDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYASTGSDFVAQAVDIAASELISIATPGQVSQVQLNRAKESTKSAVLMNLESRMIVSEDIGRQILTYGERKPVEHFLKAVDSITLNDITNIAQKVISSPLTMASYGDVINVPTYESVNSREVRAKKPQPKQRRENFRGNFFDSLTRRRSKMSWQSYIDDQLMYEVDGQHLKAAAIIGNDGSIWAQSTGFPQYKPEEITAIMKDFDEPGSLAPTGLHLGGSKYMVIQGESGAVIRGKKGTSGITVKKTNQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGL 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29844969 29853360 - ClCG07G013380.2 Cla07g01272 277260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01272 666 Gene3D Dynein light chain 2a, cytoplasmic 534 666 - -
Cla07g01272 666 SMART prof_2 536 666 IPR005455 GO:0003779
Cla07g01272 666 SUPERFAMILY LuxS/MPP-like metallohydrolase 309 500 IPR011249 GO:0046872
Cla07g01272 666 CDD PROF 537 665 IPR005455 GO:0003779
Cla07g01272 666 Gene3D - 290 508 - -
Cla07g01272 666 ProSitePatterns Insulinase family, zinc-binding region signature. 106 129 IPR001431 GO:0004222|GO:0006508
Cla07g01272 666 Gene3D - 67 278 - -
Cla07g01272 666 PRINTS Plant profilin signature 587 601 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Plant profilin signature 639 652 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Plant profilin signature 562 575 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Plant profilin signature 606 615 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Plant profilin signature 619 634 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Plant profilin signature 536 549 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Plant profilin signature 652 665 IPR005455 GO:0003779
Cla07g01272 666 PANTHER MITOCHONDRIAL-PROCESSING PEPTIDASE SUBUNIT ALPHA-LIKE 15 504 IPR037715 GO:0006627
Cla07g01272 666 Pfam Profilin 536 665 IPR005455 GO:0003779
Cla07g01272 666 Pfam Peptidase M16 inactive domain 243 425 IPR007863 -
Cla07g01272 666 SUPERFAMILY LuxS/MPP-like metallohydrolase 75 284 IPR011249 GO:0046872
Cla07g01272 666 Pfam Insulinase (Peptidase family M16) 87 231 IPR011765 -
Cla07g01272 666 PRINTS Profilin signature 599 613 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Profilin signature 575 595 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Profilin signature 635 648 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Profilin signature 556 565 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Profilin signature 648 665 IPR005455 GO:0003779
Cla07g01272 666 PRINTS Profilin signature 538 547 IPR005455 GO:0003779
Cla07g01272 666 PANTHER METALLOPROTEASE 15 504 - -
Cla07g01272 666 SUPERFAMILY Profilin (actin-binding protein) 537 665 IPR036140 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g01272 Cla09g00022 CCT
Cla07g01272 Cla09g00022 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01272 Cla-Chr7:29844969 Cla11g01470 Cla-Chr11:28339638 2.95E-54 dispersed
Cla07g00701 Cla-Chr7:18483046 Cla07g01272 Cla-Chr7:29844969 1.99E-55 transposed
Cla11g00176 Cla-Chr11:2099113 Cla07g01272 Cla-Chr7:29844969 0 transposed
Cla11g00182 Cla-Chr11:2171837 Cla07g01272 Cla-Chr7:29844969 5.27E-64 wgd
Cla07g01272 Cla-Chr7:29844969 Cla09g00022 Cla-Chr9:276663 1.63E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01272 K01412 - csv:101217854 926.006