Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01296 ATGAGTCGGGAGCAGAAGCGGGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCACTGGTTTGGGCGTTGACTCATGTTGTTCAAATAGGAGATTGCATAACTCTGCTGGTTGTTGTCCCTTCTCAAAGCTCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTGCTGGGGATTGTGCAAGTGGTCACAAGAAAGCTCATTCTGGAACAAGCTCGGAGCTGAAATGTGATATTACCGATTCCTGTTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCGCCAAGTGGGTCTGTAGCTGCTGAGGCCAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAGCGATCACAACCGAAAGTTCTTCGTTTGAACCTGGTTGGGTCTCCAAAGAAGGAACAAGAAGTGCCCTCTCCGTCACCTTCTGATATAGATGAAGGGTCTGAAAGCCATCAAAAAGAAAATAATGATCCTCTAGATTTCATACGGGGACCAGTTGTGACCCCCAGTAGCAGCCCAGAGTTGGGCACACCTTTTACTGTTACCGAAGCTGGAACATCATCAGTGTCAAGCTCAGATCCTGGAACTTCACCATTTTTTAACTCTGAAATGAATGGAGACACAAAGAAGGAGGAATTGTTTGTTATAAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGACTCGGATATTGAGAATTTATCTGTATCTTCTGCGAGTTTAAGATTCCAACCATGGATGACAGAGTTTCTAAGTTCTCATCTTCAATCCTCACAACACATAAGTGGAAGGTCACAGAGATGTGATGACATGAATCAAGTGTCAACAAGAAAATCTTTTCTACCAAAGTCTTCTAAACTTGACAGAGAATCAAGCATTGGAATGTCAAGCCATAGAAGTGACAATGATTTTCATGGAGATGTACGAGATGCAGTTTCATTATCCCGGAACACACCACCAGGCCCTCCTCCATTATGTTCAATATGCCAACACAAGGCACCAGTTTTTGGAAAGCCTCCAAGGTGGTTTAGCTATGCTGAGCTGGAGCTTGCTACTGGTGGATTTTCACAAGCCAACTTTTTGGCTGAAGGAGGATATGGATCTGTTCACAGAGGGGTACTCCCAGATGGACAGGTGGTCGCCGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCAGAAGTCGAAGTTCTTAGCTGTGCACAACATCGAAACGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAGAGAAGGTTGTTGGTGTATGAATACATCTGCAATGGTTCACTGGATTCTCATTTATATGGACGCCAACAAGAGCCACTAGAATGGTCTGCACGGCAAAAAATTGCTGTGGGAGCTGCAAGGGGGCTACGATATCTCCATGAAGAATGTAGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCAAACAACATTCTTATCACCCATGATTTTGAACCACTAGTTGGAGATTTTGGCCTTGCAAGGTGGCAGCCGGACGGAGATACCGGTGTTGAAACAAGAGTTATTGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCGGATGTTTATTCCTTTGGGGTGGTACTGGTGGAGCTAATTACTGGAAGAAAAGCCGTAGACCTTAGTCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCGCGCCCCTTGTTGGATGAATTTCTTATTGATGAACTGATTGATCCGAGGTTGGGAAATAACTTTGCAGAGCATGAAGTGTACTGCATGCTGCATGCCGCATCGTTATGCATCCGAAGAGATCCTAACGCAAGGCCTCGTATGTCACAGAATAACAATGTGGAATTAGTTCAACACAACTTCAATGAGGTAGAAATAAGAAATGCTAAAAGCGACCTCGTCATGGACGCTAATTACTTGTCAACTCCTGGATACGATATGGGAAATCGGAGTGGTCGGATGTGGACCGATCAGCAGCAGCAGCAGCAGCAGCAGCAAAACTACAGTGGCTCATTATCAGATGAGACTCTAGAGAGGTTCAATGAAAAAGTCTGTGTTGAGAGTTTAAGACCAGTAGCAGTATTAGTAAGTGGAAAAATATGGTGGGACAAGGTACCGATGGATGTTTGGACAGGCCAGTTGGACCAAATCATGAAAACAAAAGATTTCGTATATCAAATGATTAAACGAGGATATTTGAAATCAAGATCATATAACAATACAAAATTTGAAAATGAACCTAAAAAAGTACTAATGGATTCCGATAAGCGATTAAGATCCAGGCGCGATCAATCCAGTATCTTCTTCATCCAAGTAAAGATTGTCGGTCTTCCTGACGGCGGCGTGCGCCAAAACGAGGGCGGCGGCGACGAGCAGAGCGATGAGAATGTTGAGTGTGGCGTTGGTCAAGAACAAGAATCCGATGGTGAGAAGGGAGAGAATGAGGAGAATGATCCAATCTTCGAGGACGCGGCCGGCGAGAATGAGAGGCTGATCGCGGAGGAAGTAGAGGAAGAGCCAGAGAGACAACATGAGGAAGAGGACGAGGAGGGAAATCGGGTGCCAGAGAAGGGCGAGGAAGAGGATTACGAGGACGACGATGGCGTAGTTCATACGGAAGTAAGCGAGATTGATTTTGATGCGAGCGAGAGTGTCGTGGAGGTTGGAAGGGAGAGTGAAGGAGCGGTAATCGGCGATCACACGCCACGGACGGCGGTGCCCTAG 2904 45.14 MSREQKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASGHKKAHSGTSSELKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGSVAAEAKRAQASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEQEVPSPSPSDIDEGSESHQKENNDPLDFIRGPVVTPSSSPELGTPFTVTEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKELDAASSDSDIENLSVSSASLRFQPWMTEFLSSHLQSSQHISGRSQRCDDMNQVSTRKSFLPKSSKLDRESSIGMSSHRSDNDFHGDVRDAVSLSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDEFLIDELIDPRLGNNFAEHEVYCMLHAASLCIRRDPNARPRMSQNNNVELVQHNFNEVEIRNAKSDLVMDANYLSTPGYDMGNRSGRMWTDQQQQQQQQQNYSGSLSDETLERFNEKVCVESLRPVAVLVSGKIWWDKVPMDVWTGQLDQIMKTKDFVYQMIKRGYLKSRSYNNTKFENEPKKVLMDSDKRLRSRRDQSSIFFIQVKIVGLPDGGVRQNEGGGDEQSDENVECGVGQEQESDGEKGENEENDPIFEDAAGENERLIAEEVEEEPERQHEEEDEEGNRVPEKGEEEDYEDDDGVVHTEVSEIDFDASESVVEVGRESEGAVIGDHTPRTAVP 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30096135 30104381 + ClCG07G013660.2 Cla07g01296 277284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01296 967 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 15 724 - -
Cla07g01296 967 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672|GO:0006468
Cla07g01296 967 MobiDBLite consensus disorder prediction 175 255 - -
Cla07g01296 967 MobiDBLite consensus disorder prediction 329 356 - -
Cla07g01296 967 SUPERFAMILY Protein kinase-like (PK-like) 389 681 IPR011009 -
Cla07g01296 967 MobiDBLite consensus disorder prediction 883 898 - -
Cla07g01296 967 MobiDBLite consensus disorder prediction 912 929 - -
Cla07g01296 967 ProSiteProfiles Protein kinase domain profile. 405 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01296 967 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Cla07g01296 967 MobiDBLite consensus disorder prediction 930 957 - -
Cla07g01296 967 CDD USP_Like 19 142 - -
Cla07g01296 967 Gene3D Transferase(Phosphotransferase) domain 1 481 686 - -
Cla07g01296 967 MobiDBLite consensus disorder prediction 342 356 - -
Cla07g01296 967 MobiDBLite consensus disorder prediction 712 731 - -
Cla07g01296 967 MobiDBLite consensus disorder prediction 711 731 - -
Cla07g01296 967 PANTHER OS01G0253100 PROTEIN 15 724 IPR045271 GO:0004714|GO:0006468
Cla07g01296 967 MobiDBLite consensus disorder prediction 220 254 - -
Cla07g01296 967 Pfam Protein tyrosine and serine/threonine kinase 409 605 IPR001245 GO:0004672|GO:0006468
Cla07g01296 967 Gene3D HUPs 3 151 IPR014729 -
Cla07g01296 967 CDD STKc_IRAK 411 670 - -
Cla07g01296 967 MobiDBLite consensus disorder prediction 839 967 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01296 Cla-Chr7:30096135 Cla11g00221 Cla-Chr11:2548037 1.66E-94 dispersed
Cla05g01971 Cla-Chr5:31514001 Cla07g01296 Cla-Chr7:30096135 0 transposed
Cla08g00648 Cla-Chr8:18679207 Cla07g01296 Cla-Chr7:30096135 3.62E-99 transposed
Cla08g00974 Cla-Chr8:22397946 Cla07g01296 Cla-Chr7:30096135 1.39E-10 transposed
Cla09g00056 Cla-Chr9:546707 Cla07g01296 Cla-Chr7:30096135 5.60E-14 transposed
Cla11g01267 Cla-Chr11:26191783 Cla07g01296 Cla-Chr7:30096135 1.09E-93 transposed
Cla03g01510 Cla-Chr3:30698263 Cla07g01296 Cla-Chr7:30096135 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80701 PF07714 PK_Tyr_Ser-Thr 9.00E-40 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01296 - - csv:101206876 1402.88