Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01308 ATGATAAAAAGTTTGTTGTTTCAACAACAAGCTCAAGCTATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCTGGTGAAGCTAGTGCCTGCTCCGGCAACCATTCCGATCAGATTCCGACCAACTATTCCGGCCAGTATTTTTCTACCCCACCACCACCCAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAAGTGATAGCTTTATCGCCGAAGACGCTTATGGCGACGAATAGATTCGTGTGCGAGATCTGTGGCAAAGGGTTTCAGAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCACAATCTTCCATGGAAGTTGAAGCAAAGAGCAAACAAAGAGGTAATAAGGAAGAAAGTTTATGTGTGCCCAGAAACAAGTTGTGTTCATCATGACCCATCAAGAGCATTAGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACAATTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCTTTGGCAGAGGAAAGTGCAAGAGCCATTACATCAAACCCAATACTAATGAATAATAATAATACTAATAATACTAATAATAGTTATAATCAAAACCATCTTCTTCCTCCACTTTCTTCCACTCCCATTTCTCACTTAAACTTCCAAATTACACAACAAACGCATTTCAATCCTCCCTTAGATCATCATATGAACTCATTTTCTCTCAAAAAAGAACACCAATTACAAAATAATAATATTCCCCCATGGTCAGACTGTCCTAATTCAAGCTCAAATAATCATAATAATCATCCAATTATAAACCCTAATCATATTGTTGGTCCCACTTCTCTTCATCTAATTCCAAGTGCTTCTTCCCTTTCTTCTCCACACATGTCAGCCACAGCACTTCTTCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCCATAATACTGAGCCACCACACACAATCACTCCCCAACAACAACATTATTCTGATTCTTCTGCAACCAACAACAACAACAATAATAATAATAATAATAATACAAATTGTAATTTTGGCCTTAATTTATCCTCATCCTCCTCCTCCTCACGTGACATTACTCATCAGCAACAGAATCAAATTTTGATGATGGGGAGTAGTACTAGTTGTAGTAGTACTACTGAAGCTGCAGGGCTTTCTCATGTACTGCCATTCTACAGGAATAAATCTTCTTCTTCACATGATCACCTCCTTCTTCATCATCATGCTAATTTTGATCAAGGAGGGACTTGTTTTGAATTAGATGAATTTGGAGGGGTTTTCAAGAAAAGTGATCATAATTCAAGTAGTGATCAAGCAGGATTGAGTACAAGAGATTTCTTGGGGTTAAGAGCTATTTCTCACACTGAGTTCTTGACTAATATTGCAGCTGCTGGTTATAGTACTAATTGCATCAATAATAATAATAATAATGTTGCTGCTCAAACTCCTCAAGCCCAAATTCAAAATCAATCCACCTGGAAAGGTTAG 1623 38.76 MIKSLLFQQQAQAMEENLSNLTSASGEASACSGNHSDQIPTNYSGQYFSTPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEESARAITSNPILMNNNNTNNTNNSYNQNHLLPPLSSTPISHLNFQITQQTHFNPPLDHHMNSFSLKKEHQLQNNNIPPWSDCPNSSSNNHNNHPIINPNHIVGPTSLHLIPSASSLSSPHMSATALLQKAAQMGATMSHNTEPPHTITPQQQHYSDSSATNNNNNNNNNNNTNCNFGLNLSSSSSSSRDITHQQQNQILMMGSSTSCSSTTEAAGLSHVLPFYRNKSSSSHDHLLLHHHANFDQGGTCFELDEFGGVFKKSDHNSSSDQAGLSTRDFLGLRAISHTEFLTNIAAAGYSTNCINNNNNNVAAQTPQAQIQNQSTWKG 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30249706 30253054 - ClCG07G013780.1 Cla07g01308 277296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01308 540 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 504 - -
Cla07g01308 540 SMART c2h2final6 126 156 IPR013087 -
Cla07g01308 540 SMART c2h2final6 161 181 IPR013087 -
Cla07g01308 540 SMART c2h2final6 84 106 IPR013087 -
Cla07g01308 540 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Cla07g01308 540 Gene3D Classic Zinc Finger 138 219 - -
Cla07g01308 540 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 504 - -
Cla07g01308 540 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
Cla07g01308 540 Gene3D Classic Zinc Finger 80 107 - -
Cla07g01308 540 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Cla07g01308 540 MobiDBLite consensus disorder prediction 345 406 - -
Cla07g01308 540 MobiDBLite consensus disorder prediction 41 68 - -
Cla07g01308 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01009 Cla-Chr2:18811623 Cla07g01308 Cla-Chr7:30249706 1.27E-107 dispersed
Cla04g00874 Cla-Chr4:23762728 Cla07g01308 Cla-Chr7:30249706 9.28E-117 dispersed
Cla07g01308 Cla-Chr7:30249706 Cla10g01937 Cla-Chr10:35207330 7.17E-114 dispersed
Cla02g00228 Cla-Chr2:2374002 Cla07g01308 Cla-Chr7:30249706 2.01E-105 transposed
Cla07g01308 Cla-Chr7:30249706 Cla09g00066 Cla-Chr9:631084 2.05E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61463 PF00096 zf-C2H2 0.0024 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01308 K25870 - csv:101204728 709.138