Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g01320 | ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCGATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGCGGTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCAAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCCCAACAGATTGAGAAGGTTATGCGGGCCCTTGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCCACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGATTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCCCTCGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCGATCAACTTTGTAACAACGGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA | 2046 | 44.43 | MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQQTMGAVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL | 681 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 30378278 | 30387906 | + | ClCG07G013890.2 | Cla07g01320 | 277308 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g01320 | 681 | SUPERFAMILY | Winged helix DNA-binding domain | 110 | 192 | IPR036390 | - | |
Cla07g01320 | 681 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 113 | 181 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cla07g01320 | 681 | CDD | DEADc_EIF4A | 313 | 510 | - | - | |
Cla07g01320 | 681 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 291 | 681 | - | - | |
Cla07g01320 | 681 | Gene3D | - | 517 | 681 | IPR027417 | - | |
Cla07g01320 | 681 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 377 | 662 | IPR027417 | - | |
Cla07g01320 | 681 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
Cla07g01320 | 681 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
Cla07g01320 | 681 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 308 | 336 | IPR014014 | GO:0003724 | |
Cla07g01320 | 681 | Pfam | Helicase conserved C-terminal domain | 534 | 642 | IPR001650 | - | |
Cla07g01320 | 681 | Pfam | linker histone H1 and H5 family | 115 | 174 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cla07g01320 | 681 | SMART | helicmild6 | 561 | 642 | IPR001650 | - | |
Cla07g01320 | 681 | SMART | ultradead3 | 327 | 524 | IPR014001 | - | |
Cla07g01320 | 681 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 339 | 509 | IPR014001 | - | |
Cla07g01320 | 681 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 455 | 463 | IPR000629 | - | |
Cla07g01320 | 681 | SMART | sant | 4 | 59 | IPR001005 | - | |
Cla07g01320 | 681 | SMART | h15plus2 | 111 | 176 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cla07g01320 | 681 | PANTHER | RNA HELICASE | 291 | 681 | - | - | |
Cla07g01320 | 681 | Pfam | DEAD/DEAH box helicase | 333 | 494 | IPR011545 | GO:0003676|GO:0005524 | |
Cla07g01320 | 681 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 520 | 681 | IPR001650 | - | |
Cla07g01320 | 681 | CDD | SF2_C_DEAD | 521 | 651 | - | - | |
Cla07g01320 | 681 | Gene3D | - | 110 | 197 | IPR036388 | - | |
Cla07g01320 | 681 | Gene3D | - | 8 | 86 | - | - | |
Cla07g01320 | 681 | ProSiteProfiles | Myb-like domain profile. | 1 | 57 | IPR001005 | - | |
Cla07g01320 | 681 | CDD | SANT_TRF | 6 | 56 | - | - | |
Cla07g01320 | 681 | SUPERFAMILY | Homeodomain-like | 2 | 59 | IPR009057 | - | |
Cla07g01320 | 681 | Gene3D | - | 298 | 516 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01643 | Cla-Chr1:31265172 | Cla07g01320 | Cla-Chr7:30378278 | 6.88E-12 | dispersed | |
Cla01g01722 | Cla-Chr1:32141475 | Cla07g01320 | Cla-Chr7:30378278 | 1.32E-35 | dispersed | |
Cla02g01648 | Cla-Chr2:31264589 | Cla07g01320 | Cla-Chr7:30378278 | 1.58E-10 | dispersed | |
Cla07g00062 | Cla-Chr7:702267 | Cla07g01320 | Cla-Chr7:30378278 | 4.10E-08 | dispersed | |
Cla07g01320 | Cla-Chr7:30378278 | Cla10g01132 | Cla-Chr10:25806437 | 1.07E-179 | dispersed | |
Cla10g00975 | Cla-Chr10:22908811 | Cla07g01320 | Cla-Chr7:30378278 | 1.17E-33 | dispersed | |
Cla01g01743 | Cla-Chr1:32330379 | Cla07g01320 | Cla-Chr7:30378278 | 1.86E-39 | transposed | |
Cla05g00180 | Cla-Chr5:1625411 | Cla07g01320 | Cla-Chr7:30378278 | 3.87E-85 | transposed | |
Cla08g01330 | Cla-Chr8:26169949 | Cla07g01320 | Cla-Chr7:30378278 | 2.29E-65 | transposed | |
Cla10g00829 | Cla-Chr10:18959063 | Cla07g01320 | Cla-Chr7:30378278 | 7.17E-59 | transposed | |
Cla07g01320 | Cla-Chr7:30378278 | Cla09g00073 | Cla-Chr9:688045 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61464 | PF00270 | DEAD | 1.10E-39 | CL0023 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g01320 | K03257 | - | csv:101223055 | 817.379 |