Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01320 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCGATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGCGGTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCAAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCCCAACAGATTGAGAAGGTTATGCGGGCCCTTGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCCACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGATTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCCCTCGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCGATCAACTTTGTAACAACGGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA 2046 44.43 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQQTMGAVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30378278 30387906 + ClCG07G013890.2 Cla07g01320 277308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01320 681 SUPERFAMILY Winged helix DNA-binding domain 110 192 IPR036390 -
Cla07g01320 681 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla07g01320 681 CDD DEADc_EIF4A 313 510 - -
Cla07g01320 681 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 291 681 - -
Cla07g01320 681 Gene3D - 517 681 IPR027417 -
Cla07g01320 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 662 IPR027417 -
Cla07g01320 681 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cla07g01320 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cla07g01320 681 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Cla07g01320 681 Pfam Helicase conserved C-terminal domain 534 642 IPR001650 -
Cla07g01320 681 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla07g01320 681 SMART helicmild6 561 642 IPR001650 -
Cla07g01320 681 SMART ultradead3 327 524 IPR014001 -
Cla07g01320 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 509 IPR014001 -
Cla07g01320 681 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 455 463 IPR000629 -
Cla07g01320 681 SMART sant 4 59 IPR001005 -
Cla07g01320 681 SMART h15plus2 111 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla07g01320 681 PANTHER RNA HELICASE 291 681 - -
Cla07g01320 681 Pfam DEAD/DEAH box helicase 333 494 IPR011545 GO:0003676|GO:0005524
Cla07g01320 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 681 IPR001650 -
Cla07g01320 681 CDD SF2_C_DEAD 521 651 - -
Cla07g01320 681 Gene3D - 110 197 IPR036388 -
Cla07g01320 681 Gene3D - 8 86 - -
Cla07g01320 681 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cla07g01320 681 CDD SANT_TRF 6 56 - -
Cla07g01320 681 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Cla07g01320 681 Gene3D - 298 516 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01643 Cla-Chr1:31265172 Cla07g01320 Cla-Chr7:30378278 6.88E-12 dispersed
Cla01g01722 Cla-Chr1:32141475 Cla07g01320 Cla-Chr7:30378278 1.32E-35 dispersed
Cla02g01648 Cla-Chr2:31264589 Cla07g01320 Cla-Chr7:30378278 1.58E-10 dispersed
Cla07g00062 Cla-Chr7:702267 Cla07g01320 Cla-Chr7:30378278 4.10E-08 dispersed
Cla07g01320 Cla-Chr7:30378278 Cla10g01132 Cla-Chr10:25806437 1.07E-179 dispersed
Cla10g00975 Cla-Chr10:22908811 Cla07g01320 Cla-Chr7:30378278 1.17E-33 dispersed
Cla01g01743 Cla-Chr1:32330379 Cla07g01320 Cla-Chr7:30378278 1.86E-39 transposed
Cla05g00180 Cla-Chr5:1625411 Cla07g01320 Cla-Chr7:30378278 3.87E-85 transposed
Cla08g01330 Cla-Chr8:26169949 Cla07g01320 Cla-Chr7:30378278 2.29E-65 transposed
Cla10g00829 Cla-Chr10:18959063 Cla07g01320 Cla-Chr7:30378278 7.17E-59 transposed
Cla07g01320 Cla-Chr7:30378278 Cla09g00073 Cla-Chr9:688045 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61464 PF00270 DEAD 1.10E-39 CL0023 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01320 K03257 - csv:101223055 817.379