Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g01336 | ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCCCATCTCAGAATCCATGATGCTGCTGCCGCCGCCGATGAACAACCCGACCACGCCGCTTTCCCGCATCTCATGCCGCTCCGCTCCGATGGATCTCTTTGTATCGCCGCCGCCCACGATTGGAGATCGTATGAGAATGAAATGGGTGCAACGAATGAAGAGGAAAGTCCAAAGCTTGAGGACTTTCTGGGGAATTGCTATTCAAACTCACCGCCAAACGATCAGACGCATAGTAGCAACGCCGCCGCCTTTATTCAGCCGAATAATAATAATAATAGTAGTAATAATAATAATGATGATAAATACCATTACCAAGCGGATCATCAAACCCATCAATCTCTAATTCCCAACAATAATAATGGAATTTATAAGTCCTGGTTGGGACCCACTCCGCAAAATGAGTGTCGGTTTCAATCTCTTTCTCTCGGTATGAGCCCCAACTCCCAAAACGACGTCGCTTCATTGCCTTCACCGCCCTCGCCGCCGCCGCATATGGCTGGTGATTCCCGGAAACGCCCCATGCCGGTAGCCAAGCCTCTGATTAAAGAACCTGTACCTAGAAAATCCATCGATACTTTTGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGTGGTTATGATAAGGAAGAGAAAGCGGCACGAGCGTATGATTTAGCTGCTTTAAAATATTGGGGACCAACTACGCATATAAATTTTCCGCTGAGCACTTATGAAAACGAGCTGGAAGAGATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGGGTTGCAGGAAATAAAGATTTGTACCTTGGCACATTTAGCACACAAGAGGAGGCAGCAGAGGCGTATGACATAGCGGCAATCAAGTTTAGGGGGACAAGTGCAGTAACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGCTCGACTCTGATTGCTAGTGACCTTGCGAAACGTTCACCATTAAAGGACGGTACTCCCTCAACTAATGAAGACTATTCTGCCTGTGCTTCTCCATCATCGTCCTCGCAACCTCTCTTGGCCATTACTGGCGATGGTGGTGCTGAGAGCCACCACGAGTTGGCTGACGTGGTTTGGTGTGACAATACTGCTACAGACGATAATAATCAGCACCACGAGAATGTAGCAAAGATGAACAACGACTTGAGTTTGATGGGTTCGAGCAATAGAACGATGGATCCATCGTCAAAGTGCTCTCCGGTGCAAAACAATGAAGAGTTCGGGATTGGGGTCGGGGGTGGAGGGGAGTACTCACAAGGCTATTTCTCAATGCAAGAAGAAAAATATGAAGATGGGAATGAGGAGGGTGATCAAAATAGTAGGCAGGTGAGTGTAACATTGGCTCATCATCATGTTCCAATGTTTGCGCTATGGAACCAATGA | 1623 | 46.15 | MSNWLGFSLTPHLRIHDAAAAADEQPDHAAFPHLMPLRSDGSLCIAAAHDWRSYENEMGATNEEESPKLEDFLGNCYSNSPPNDQTHSSNAAAFIQPNNNNNSSNNNNDDKYHYQADHQTHQSLIPNNNNGIYKSWLGPTPQNECRFQSLSLGMSPNSQNDVASLPSPPSPPPHMAGDSRKRPMPVAKPLIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGTPSTNEDYSACASPSSSSQPLLAITGDGGAESHHELADVVWCDNTATDDNNQHHENVAKMNNDLSLMGSSNRTMDPSSKCSPVQNNEEFGIGVGGGGEYSQGYFSMQEEKYEDGNEEGDQNSRQVSVTLAHHHVPMFALWNQ | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 30575443 | 30579167 | + | ClCG07G014050.2 | Cla07g01336 | 277324 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g01336 | 540 | PRINTS | Ethylene responsive element binding protein signature | 210 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | PRINTS | Ethylene responsive element binding protein signature | 351 | 371 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | ProSiteProfiles | AP2/ERF domain profile. | 311 | 369 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | MobiDBLite | consensus disorder prediction | 76 | 110 | - | - | |
Cla07g01336 | 540 | ProSiteProfiles | AP2/ERF domain profile. | 209 | 275 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | MobiDBLite | consensus disorder prediction | 392 | 417 | - | - | |
Cla07g01336 | 540 | Gene3D | AP2/ERF domain | 311 | 371 | IPR036955 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | Gene3D | AP2/ERF domain | 208 | 277 | IPR036955 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | CDD | AP2 | 310 | 371 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | SUPERFAMILY | DNA-binding domain | 208 | 277 | IPR016177 | GO:0003677 | |
Cla07g01336 | 540 | SUPERFAMILY | DNA-binding domain | 310 | 371 | IPR016177 | GO:0003677 | |
Cla07g01336 | 540 | MobiDBLite | consensus disorder prediction | 396 | 417 | - | - | |
Cla07g01336 | 540 | Pfam | AP2 domain | 312 | 361 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | Pfam | AP2 domain | 209 | 267 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 60 | 499 | - | - | |
Cla07g01336 | 540 | SMART | rav1_2 | 209 | 281 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | SMART | rav1_2 | 311 | 375 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | MobiDBLite | consensus disorder prediction | 71 | 113 | - | - | |
Cla07g01336 | 540 | MobiDBLite | consensus disorder prediction | 150 | 164 | - | - | |
Cla07g01336 | 540 | CDD | AP2 | 208 | 277 | IPR001471 | GO:0003700|GO:0006355 | |
Cla07g01336 | 540 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 60 | 499 | - | - | |
Cla07g01336 | 540 | MobiDBLite | consensus disorder prediction | 150 | 184 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02027 | Cla-Chr2:35285902 | Cla07g01336 | Cla-Chr7:30575443 | 1.54E-09 | dispersed | |
Cla05g02656 | Cla-Chr5:37771031 | Cla07g01336 | Cla-Chr7:30575443 | 3.94E-124 | dispersed | |
Cla07g01336 | Cla-Chr7:30575443 | Cla11g00873 | Cla-Chr11:14128578 | 5.06E-120 | dispersed | |
Cla07g01336 | Cla-Chr7:30575443 | Cla08g01641 | Cla-Chr8:29034235 | 5.96E-136 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61468 | PF00847 | AP2 | 4.20E-13 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g01336 | K09285 | - | csv:101205762 | 875.159 |