Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01336 ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCCCATCTCAGAATCCATGATGCTGCTGCCGCCGCCGATGAACAACCCGACCACGCCGCTTTCCCGCATCTCATGCCGCTCCGCTCCGATGGATCTCTTTGTATCGCCGCCGCCCACGATTGGAGATCGTATGAGAATGAAATGGGTGCAACGAATGAAGAGGAAAGTCCAAAGCTTGAGGACTTTCTGGGGAATTGCTATTCAAACTCACCGCCAAACGATCAGACGCATAGTAGCAACGCCGCCGCCTTTATTCAGCCGAATAATAATAATAATAGTAGTAATAATAATAATGATGATAAATACCATTACCAAGCGGATCATCAAACCCATCAATCTCTAATTCCCAACAATAATAATGGAATTTATAAGTCCTGGTTGGGACCCACTCCGCAAAATGAGTGTCGGTTTCAATCTCTTTCTCTCGGTATGAGCCCCAACTCCCAAAACGACGTCGCTTCATTGCCTTCACCGCCCTCGCCGCCGCCGCATATGGCTGGTGATTCCCGGAAACGCCCCATGCCGGTAGCCAAGCCTCTGATTAAAGAACCTGTACCTAGAAAATCCATCGATACTTTTGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGTGGTTATGATAAGGAAGAGAAAGCGGCACGAGCGTATGATTTAGCTGCTTTAAAATATTGGGGACCAACTACGCATATAAATTTTCCGCTGAGCACTTATGAAAACGAGCTGGAAGAGATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGGGTTGCAGGAAATAAAGATTTGTACCTTGGCACATTTAGCACACAAGAGGAGGCAGCAGAGGCGTATGACATAGCGGCAATCAAGTTTAGGGGGACAAGTGCAGTAACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGCTCGACTCTGATTGCTAGTGACCTTGCGAAACGTTCACCATTAAAGGACGGTACTCCCTCAACTAATGAAGACTATTCTGCCTGTGCTTCTCCATCATCGTCCTCGCAACCTCTCTTGGCCATTACTGGCGATGGTGGTGCTGAGAGCCACCACGAGTTGGCTGACGTGGTTTGGTGTGACAATACTGCTACAGACGATAATAATCAGCACCACGAGAATGTAGCAAAGATGAACAACGACTTGAGTTTGATGGGTTCGAGCAATAGAACGATGGATCCATCGTCAAAGTGCTCTCCGGTGCAAAACAATGAAGAGTTCGGGATTGGGGTCGGGGGTGGAGGGGAGTACTCACAAGGCTATTTCTCAATGCAAGAAGAAAAATATGAAGATGGGAATGAGGAGGGTGATCAAAATAGTAGGCAGGTGAGTGTAACATTGGCTCATCATCATGTTCCAATGTTTGCGCTATGGAACCAATGA 1623 46.15 MSNWLGFSLTPHLRIHDAAAAADEQPDHAAFPHLMPLRSDGSLCIAAAHDWRSYENEMGATNEEESPKLEDFLGNCYSNSPPNDQTHSSNAAAFIQPNNNNNSSNNNNDDKYHYQADHQTHQSLIPNNNNGIYKSWLGPTPQNECRFQSLSLGMSPNSQNDVASLPSPPSPPPHMAGDSRKRPMPVAKPLIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGTPSTNEDYSACASPSSSSQPLLAITGDGGAESHHELADVVWCDNTATDDNNQHHENVAKMNNDLSLMGSSNRTMDPSSKCSPVQNNEEFGIGVGGGGEYSQGYFSMQEEKYEDGNEEGDQNSRQVSVTLAHHHVPMFALWNQ 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30575443 30579167 + ClCG07G014050.2 Cla07g01336 277324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01336 540 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 PRINTS Ethylene responsive element binding protein signature 351 371 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 ProSiteProfiles AP2/ERF domain profile. 311 369 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 MobiDBLite consensus disorder prediction 76 110 - -
Cla07g01336 540 ProSiteProfiles AP2/ERF domain profile. 209 275 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 MobiDBLite consensus disorder prediction 392 417 - -
Cla07g01336 540 Gene3D AP2/ERF domain 311 371 IPR036955 GO:0003700|GO:0006355
Cla07g01336 540 Gene3D AP2/ERF domain 208 277 IPR036955 GO:0003700|GO:0006355
Cla07g01336 540 CDD AP2 310 371 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 SUPERFAMILY DNA-binding domain 208 277 IPR016177 GO:0003677
Cla07g01336 540 SUPERFAMILY DNA-binding domain 310 371 IPR016177 GO:0003677
Cla07g01336 540 MobiDBLite consensus disorder prediction 396 417 - -
Cla07g01336 540 Pfam AP2 domain 312 361 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 Pfam AP2 domain 209 267 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 60 499 - -
Cla07g01336 540 SMART rav1_2 209 281 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 SMART rav1_2 311 375 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 MobiDBLite consensus disorder prediction 71 113 - -
Cla07g01336 540 MobiDBLite consensus disorder prediction 150 164 - -
Cla07g01336 540 CDD AP2 208 277 IPR001471 GO:0003700|GO:0006355
Cla07g01336 540 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 499 - -
Cla07g01336 540 MobiDBLite consensus disorder prediction 150 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02027 Cla-Chr2:35285902 Cla07g01336 Cla-Chr7:30575443 1.54E-09 dispersed
Cla05g02656 Cla-Chr5:37771031 Cla07g01336 Cla-Chr7:30575443 3.94E-124 dispersed
Cla07g01336 Cla-Chr7:30575443 Cla11g00873 Cla-Chr11:14128578 5.06E-120 dispersed
Cla07g01336 Cla-Chr7:30575443 Cla08g01641 Cla-Chr8:29034235 5.96E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61468 PF00847 AP2 4.20E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01336 K09285 - csv:101205762 875.159