Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01350 ATGAGACCGCTCCAGCCGCCTCAGGGTGCGAATCCTCCCACCGATCGTACTCGTCGTCGACCGCAGCTAAATAATCTTCAGCTTCCGCAGAGGGACAATACGTCTTTGGCTGTTCCTCTCCCTTTGCCTCCCACCTCCTCCAACTCTGCGCATCCTCCTTCCACCAGTCAACTCCACAACGCCAACCGCCCGCCGGACCCTCATCCTCAGAAGCGTCAGGCTTTTAGCCTTTCGGATTTTGAGCGAGTGAGCCGAATCGGAAGTGGATGCGGAGGCACCGTCTATAAAGTGGTTCACCGTCCCACCGGCGGTGTTTATGCTCTCAAGGTCATTTACGGCAACCATGAGGATGCGGTTAGGCTCCAGATGTGCCGGGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCATAACGGCGAAATCCAGGTTCTTCTTGAGTACATGGATCGGGGTTCTTTAGAAGGAACGCACATCCCTCAAGAACACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGCGGCCTCGCTTATCTCCATAGCCGCCGTATCGTCCATCGCGACATCAAACCCTCGAATCTCCTCATCAATTCCAGAAGACAGGTTAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGCAATTCCTCGGTTGGGACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGGTATGCTGGTGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGTCGGTTTCCTCTTGCTGTCGAGAGACCTGGGGATTGGGCGAGCTTGATGTGCGCTATTTGTATGGCTCAGCCACCAGAGGCCCCGCCCACTGCTTCCCCGGAGTTTCGCCACTTTATTGCCTGTTGTTTGCAAAGAGAGGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCATTCATAACCAGGAAAAATGGAGCAACTCAGTACCAGAATCAGCAAGCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCACCCCTTCATCCTTCCAGCCTTTCCTGA 1110 52.16 MRPLQPPQGANPPTDRTRRRPQLNNLQLPQRDNTSLAVPLPLPPTSSNSAHPPSTSQLHNANRPPDPHPQKRQAFSLSDFERVSRIGSGCGGTVYKVVHRPTGGVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGATQYQNQQAHHQNLRQLLPPPPLHPSSLS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30670398 30671507 + ClCG07G014190.1 Cla07g01350 277338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01350 369 MobiDBLite consensus disorder prediction 1 72 - -
Cla07g01350 369 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 356 - -
Cla07g01350 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 356 - -
Cla07g01350 369 SUPERFAMILY Protein kinase-like (PK-like) 59 355 IPR011009 -
Cla07g01350 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Cla07g01350 369 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Cla07g01350 369 Pfam Protein kinase domain 80 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01350 369 SMART serkin_6 80 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01350 369 CDD PKc_MAPKK_plant_like 78 336 - -
Cla07g01350 369 MobiDBLite consensus disorder prediction 11 63 - -
Cla07g01350 369 Gene3D Phosphorylase Kinase; domain 1 55 159 - -
Cla07g01350 369 ProSiteProfiles Protein kinase domain profile. 80 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01350 369 MobiDBLite consensus disorder prediction 345 369 - -
Cla07g01350 369 Gene3D Transferase(Phosphotransferase) domain 1 161 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00888 Cla-Chr3:12468569 Cla07g01350 Cla-Chr7:30670398 5.80E-21 dispersed
Cla04g01028 Cla-Chr4:25428858 Cla07g01350 Cla-Chr7:30670398 1.63E-87 dispersed
Cla07g01350 Cla-Chr7:30670398 Cla11g00151 Cla-Chr11:1802433 3.63E-56 dispersed
Cla07g01350 Cla-Chr7:30670398 Cla03g01476 Cla-Chr3:30269699 8.04E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80704 PF00069 Pkinase 7.10E-60 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01350 K13413 - csv:101219669 688.723