Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01358 ATGGCACAAACCGACGACTGCGCCGTCACCGGATTTTTGTTCTCCGGCAGCCCCATTTCCATTTCCAACATAAAAATCAAGCTGTTGGTGTTAGCCGTGTGGGCTGCGCTTGTCCTGACGGGCGTCTCCTCCGACGAGCACGTGAGAAGCACGTGCGCCATGACGCTTTACCCGGAGCTTTGCGAGACGACGATATCGAGCGGAGTGGGAAGTAAGAGTTCAAAAGAGGCAATCGAATCGTCGGTGAATATTACGATTGGCGCAGTGAAGGATAACTATAAAAGGATCAAGAAATTGGTTAAGACAGGAAAGAATCTGAGAAAGCGAGAGAAGATTGCTCTCAATGACTGTCTAGAAACAGGGGAGGAGACGCTGAGAGAGCTGTATGAGGTTGTTGATGATCTCCATGAATATCCTAATAAGAAATCTCTCTCACAATACGCCGATGACCTCAAAACCTTCCTCAGTTCCGCCATTACGAATCAGGAGACATGCGTGGACGGATTCTCGCACGACAAAGCCGACAAGAAGGTACGAGAGTCATTAGAAGCAGGCCTAATTCACGTCGAAAAGCTTTGTAGCGTTGCTTTAGCCTTGATTAAGAATCTAACCGACACCGACATTGCCAATCACAACGACAACCTCATCAATAGAAACCAGCTCACGGAGATCAACAATGGACGCGACCACGACGGAATTAACTGGCCCCATTGGATGTCGCCTGGCGACCGAAGGCTTTTGCAGGCGTCGTCCACCGCCACTCCCGATGTGGTAGTGGCAGCCGATGGAAGTGGCAATTTCCGAACGGTGTCGGAGGCGGTTGCGGCGGCGCCGAATAGAAGTAGCCGGAGGTATATAATAAGAATAAAGGCAGGGGTTTATAGAGAAAATGTGAATGTGCCGAGTAGTAAGACGAATATAATGTTTTGGGGAGATGGAAGAACCACCACTATAATCACCGGGAACAGAAATGTCGTCGATGGCACGGCAGTGGGAGAAAGGTTCTTGGCGAGAGACATTACGTTTCAGAACACCGCCGGTCCATCGAAGCACCAAGCGAGGAACATGGTGACTGCACAAGGAAGAACAGACCCAAATCAAAACACTGGGATTGTCATCCAGAAATGTCGAATCGGAACCACCTCCGATTTGCAGCCGGTGATCAGTAATTTCCCAACGTTTCTGGGGCGGCCGTGGCAGAGATACTCGAGAACGGTGGTTATGCAGACGAGCATTAGCAATGTGATCGATCCGGCAGGGTGGCATGTTTGGGATGGGAATTTTGCGCTTGATACTCTGTTTTACGCCGAGTATCAGAATAGCGGGCCCGGTGCTGATACGTCAAGGAGAGTAACGTGGAAGGGGTATAGGGTTCTTACAAGTGCGGCGGAAGCTGCGGCCTTCACGGCAGGGAATTTCATCGGCGGCGGCACCTGGCTGAGATCCACTGGATTCCCATTTTCACTTGGGCTGCAATTCCCTTCCCTGAGGAGAACAACCTCCATTTCTCGATCGCCACGCATTTCCTTTTCAAACGGAACCCCAACTCTGAAATCCATGGATACCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAACAGCAAGCTTTCCGCCAAAAGACTCGTCGCCGGCTAATCATACTCCTTCTTTCCATTCTTCTTCTAATTGCTCTCGTCATCGGCGCCGTCGTCGGAATTGTCATTCATAAACGAAACTCTTCTTCTTCATCGCCCACCAGCTCAGCTCCTCCCACCGAGCTCACTCCCGCTGCCTCACTCAAAACTCTCTGTAGTGTTACTCAGTATCCCAGTTCCTGTCAGTCCTCTCTCCAAAACTCCAACACTACCGATCCGGTATTTCTCTTCAAGCTTTCTCTCCGAGTTGCCACCGATTCCCTCTCGAAACTTTCCGATTATACCTCTACTCTCAATTCCAATACTGGAGATCCGAAGGTTAAAGCCGCCATTGAAATCTGCCGGAGTGTTTTTGAAGATGCCATTGACACGCTAAACGACACCGTTTCATCCATGGAAGTGGATCACCATAGTGAGAAGTTCTTGTCGCCGTCTAGGATTGAAGATCTGAAAACCTGGCTGAGCACTACAATCACAGATCAAGAAACCTGCCTCGACGCAGTTCGAGATCTAAACCAGACGACGCTTCTCCAAAACTTGCAAACGGCAATGGCGAACTCTACTGAGTTTACTAGCAATAGTTTAGCGATTGTAACGAAAATCCTTGGACTGTTGGCTGATTTCAACATCCCTATCCACCGGAAGCTGATGGGACTCCCGGAGTGGTTAAGCTCCGGCGATCGAAGGCTTCTGCAGGAGAACAATGTGACGGCGCATATGACGGTGTCGAAGGATGGGAAAGGGCACTACACAACGATCAAAGATGCCGTAGCGGCGGTGCCAAAGAAGAGCAAAGAAAGATTCATCATACATGTAAAAGAAGGAATATACGAAGAGAATGTGATTCTGGACAAGAACAAGTGGAACGTTATGATGTATGGAGATGGCAGAACCAAAACCATTGTTTCGGGCCACCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTTGCTGGCAAAGGGTTCATTGGGAAGGACATGGGGTTCATCAACACGGCCGCCCAAGGCAAAAAGGACATCAACCAAAACTCCGGCATTTCCATTCAGAAATGCACTTTTTCGGCCTACAACGACAGTCTAACCGCCCCCACTTACCTGGGTCGGCCATGGAAGGAGTTTTCCACCACGGTGATTATGCAGTCGGACATCGGAGCATTCCTGCAGCCCGTGGGGTGGAAGGAATGGGTCAGCGGGCAGGACCCACCCAGCAGCATATTTTATGGGGAGTATCAGAATACTGGGCCTGGATCCAGCGTGGACAAGAGGGTTAGATGGGCCGGTTACAGGCCCAGTCTTACGGACGCCGAGGCCGGAAAGTTCACTGTCAGGACCTTCCTCAACGGCGAGGATTGGTTGCCGGCCACCAGTGTAAAGTTTGATACATCCTTGTGA 3051 50.54 MAQTDDCAVTGFLFSGSPISISNIKIKLLVLAVWAALVLTGVSSDEHVRSTCAMTLYPELCETTISSGVGSKSSKEAIESSVNITIGAVKDNYKRIKKLVKTGKNLRKREKIALNDCLETGEETLRELYEVVDDLHEYPNKKSLSQYADDLKTFLSSAITNQETCVDGFSHDKADKKVRESLEAGLIHVEKLCSVALALIKNLTDTDIANHNDNLINRNQLTEINNGRDHDGINWPHWMSPGDRRLLQASSTATPDVVVAADGSGNFRTVSEAVAAAPNRSSRRYIIRIKAGVYRENVNVPSSKTNIMFWGDGRTTTIITGNRNVVDGTAVGERFLARDITFQNTAGPSKHQARNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVISNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGPGADTSRRVTWKGYRVLTSAAEAAAFTAGNFIGGGTWLRSTGFPFSLGLQFPSLRRTTSISRSPRISFSNGTPTLKSMDTVKSFKGYGKVDELEQQAFRQKTRRRLIILLLSILLLIALVIGAVVGIVIHKRNSSSSSPTSSAPPTELTPAASLKTLCSVTQYPSSCQSSLQNSNTTDPVFLFKLSLRVATDSLSKLSDYTSTLNSNTGDPKVKAAIEICRSVFEDAIDTLNDTVSSMEVDHHSEKFLSPSRIEDLKTWLSTTITDQETCLDAVRDLNQTTLLQNLQTAMANSTEFTSNSLAIVTKILGLLADFNIPIHRKLMGLPEWLSSGDRRLLQENNVTAHMTVSKDGKGHYTTIKDAVAAVPKKSKERFIIHVKEGIYEENVILDKNKWNVMMYGDGRTKTIVSGHLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAAQGKKDINQNSGISIQKCTFSAYNDSLTAPTYLGRPWKEFSTTVIMQSDIGAFLQPVGWKEWVSGQDPPSSIFYGEYQNTGPGSSVDKRVRWAGYRPSLTDAEAGKFTVRTFLNGEDWLPATSVKFDTSL 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30728436 30739437 + ClCG07G014280.1 Cla07g01358 277346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01358 1016 SUPERFAMILY Pectin lyase-like 250 490 IPR011050 -
Cla07g01358 1016 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 596 750 IPR035513 -
Cla07g01358 1016 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 205 IPR035513 -
Cla07g01358 1016 CDD PMEI-like_3 50 204 - -
Cla07g01358 1016 SUPERFAMILY Pectin lyase-like 785 1012 IPR011050 -
Cla07g01358 1016 PANTHER PECTINESTERASE 355 488 - -
Cla07g01358 1016 PANTHER PECTINESTERASE 527 887 - -
Cla07g01358 1016 PANTHER PECTINESTERASE 1-RELATED 39 354 - -
Cla07g01358 1016 Gene3D - 781 889 IPR012334 -
Cla07g01358 1016 Gene3D - 890 1016 IPR012334 -
Cla07g01358 1016 Gene3D - 354 491 IPR012334 -
Cla07g01358 1016 Gene3D - 250 353 IPR012334 -
Cla07g01358 1016 PANTHER PECTINESTERASE 1-RELATED 887 1013 - -
Cla07g01358 1016 PANTHER PECTINESTERASE 1-RELATED 355 488 - -
Cla07g01358 1016 PANTHER PECTINESTERASE 1-RELATED 527 887 - -
Cla07g01358 1016 PANTHER PECTINESTERASE 887 1013 - -
Cla07g01358 1016 PANTHER PECTINESTERASE 39 354 - -
Cla07g01358 1016 CDD PMEI-like_3 598 749 - -
Cla07g01358 1016 Pfam Pectinesterase 886 1001 IPR000070 GO:0030599|GO:0042545
Cla07g01358 1016 Pfam Pectinesterase 256 353 IPR000070 GO:0030599|GO:0042545
Cla07g01358 1016 Pfam Pectinesterase 354 476 IPR000070 GO:0030599|GO:0042545
Cla07g01358 1016 Pfam Plant invertase/pectin methylesterase inhibitor 596 745 IPR006501 GO:0004857
Cla07g01358 1016 Pfam Plant invertase/pectin methylesterase inhibitor 48 199 IPR006501 GO:0004857
Cla07g01358 1016 Gene3D Invertase/pectin methylesterase inhibitor family protein 594 750 IPR035513 -
Cla07g01358 1016 SMART PMEI_2 43 199 IPR006501 GO:0004857
Cla07g01358 1016 SMART PMEI_2 591 745 IPR006501 GO:0004857
Cla07g01358 1016 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Cla07g01358 1016 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 204 IPR035513 -
Cla07g01358 1016 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 204 IPR006501 GO:0004857
Cla07g01358 1016 TIGRFAM PME_inhib: pectinesterase inhibitor domain 576 749 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01358 Cla-Chr7:30728436 Cla09g00813 Cla-Chr9:8308978 9.80E-23 dispersed
Cla01g00700 Cla-Chr1:8217239 Cla07g01358 Cla-Chr7:30728436 2.81E-68 transposed
Cla04g01212 Cla-Chr4:27253432 Cla07g01358 Cla-Chr7:30728436 8.19E-33 transposed
Cla11g01417 Cla-Chr11:27735606 Cla07g01358 Cla-Chr7:30728436 5.61E-46 transposed
Cla07g01358 Cla-Chr7:30728436 Cla09g00131 Cla-Chr9:1312134 1.38E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01358 - K01051 jre:109004988 676.781