Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01362 ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGTTGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTCATCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACGCCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAGAATTAAATCTTCAGTTCAGTGCGCGTCAATTGTATATGCTATTAATGACTTTAAAAATATGGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGCGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATATAAAGCATGAGATTATTGAAAATAACCAGTTAGTTCATGCCATGCACGACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGTATTGGGGGAGTTCAAGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAAGATTCCTTCCATTAGAAGAATAGGTGGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCTGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGAAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGTCTTCTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCACAAGGAATAATGAATCCACGGATACCTTGA 2391 43.29 MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVVEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFIYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGSNYGLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEELNLQFSARQLYMLLMTLKIWFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAMHDCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKRVEPSQGIRSTLSHDSPAYAKIPSIRRIGGEEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMMPFSGLTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGIMNPRIP 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30760390 30767806 + ClCG07G014320.2 Cla07g01362 277350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01362 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 779 IPR013083 -
Cla07g01362 796 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 785 IPR042293 -
Cla07g01362 796 SUPERFAMILY FYVE/PHD zinc finger 705 773 IPR011011 -
Cla07g01362 796 CDD ARID 611 709 - -
Cla07g01362 796 CDD PHD_ARID4_like 719 770 - -
Cla07g01362 796 Pfam ARID/BRIGHT DNA binding domain 612 709 IPR001606 GO:0003677
Cla07g01362 796 Gene3D - 606 709 IPR036431 GO:0003677
Cla07g01362 796 SUPERFAMILY ARID-like 609 724 IPR036431 GO:0003677
Cla07g01362 796 ProSiteProfiles ARID domain profile. 609 713 IPR001606 GO:0003677
Cla07g01362 796 SMART ARID_2 606 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01362 Cla-Chr7:30760390 Cla06g00111 Cla-Chr6:1184696 7.97E-06 dispersed
Cla07g01362 Cla-Chr7:30760390 Cla09g00122 Cla-Chr9:1253912 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61470 PF01388 ARID 7.40E-14 CL0123 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01362 - - csv:101215769 1460.66