Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01362 ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGTTGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTCATCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACGCCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAGAATTAAATCTTCAGTTCAGTGCGCGTCAATTGTATATGCTATTAATGACTTTAAAAATATGGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGCGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATATAAAGCATGAGATTATTGAAAATAACCAGTTAGTTCATGCCATGCACGACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGTATTGGGGGAGTTCAAGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAAGATTCCTTCCATTAGAAGAATAGGTGGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCTGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGAAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGTCTTCTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCACAAGGAATAATGAATCCACGGATACCTTGA 2391 43.29 MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVVEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFIYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGSNYGLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEELNLQFSARQLYMLLMTLKIWFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAMHDCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKRVEPSQGIRSTLSHDSPAYAKIPSIRRIGGEEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMMPFSGLTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGIMNPRIP 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30760390 30767806 + ClCG07G014320.2 Cla07g01362 277350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01362 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 779 IPR013083 -
Cla07g01362 796 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 785 IPR042293 -
Cla07g01362 796 SUPERFAMILY FYVE/PHD zinc finger 705 773 IPR011011 -
Cla07g01362 796 CDD ARID 611 709 - -
Cla07g01362 796 CDD PHD_ARID4_like 719 770 - -
Cla07g01362 796 Pfam ARID/BRIGHT DNA binding domain 612 709 IPR001606 GO:0003677
Cla07g01362 796 Gene3D - 606 709 IPR036431 GO:0003677
Cla07g01362 796 SUPERFAMILY ARID-like 609 724 IPR036431 GO:0003677
Cla07g01362 796 ProSiteProfiles ARID domain profile. 609 713 IPR001606 GO:0003677
Cla07g01362 796 SMART ARID_2 606 709 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01362 - - - csv:101215769 1460.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01362 Cla-Chr7:30760390 Cla06g00111 Cla-Chr6:1184696 7.97E-06 dispersed
Cla07g01362 Cla-Chr7:30760390 Cla09g00122 Cla-Chr9:1253912 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00008 . 340 610 ARID Transcription Factor Family AT1G20910 61.4 1.5e-91 333.6
Cla05g01592 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.6e-111 397.9
Cla09g01192 . 228 497 ARID Transcription Factor Family AT1G76110 58.2 7.7e-84 307.8
Cla10g00008 . 319 640 ARID Transcription Factor Family AT1G76510 60.2 1.8e-109 393.3
Cla07g01362 . 1 793 ARID Transcription Factor Family AT3G43240 57.5 2.9e-261 898.3
Cla09g00122 . 2 770 ARID Transcription Factor Family AT3G43240 57.9 1.4e-258 889.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61470 PF01388 ARID 7.40E-14 CL0123 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g01362 Cla_Chr07 FPKM 15.682182 17.282492 28.204109 27.067991 30.560093 33.081909 30.230734 38.072914 38.190483 38.255264