Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01390 ATGCAATTGGTACCAAATCATGATGAAAATAAAGATGATATTCTGGAGCGTGCACCCATTTTAAGTCACTTGGATTTTCTGCCACAGTCTGTGGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGTTCAGTTAGTGATGATGATTTACACAATCTTATTGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTAGGGGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGATTCTATGCCATGGCTGTCTTAGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCACGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA 789 41.83 MQLVPNHDENKDDILERAPILSHLDFLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLIVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31024191 31029275 - ClCG07G014630.1 Cla07g01390 277378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01390 262 SUPERFAMILY RING/U-box 70 126 - -
Cla07g01390 262 PANTHER OS02G0132300 PROTEIN 2 261 - -
Cla07g01390 262 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 261 - -
Cla07g01390 262 Pfam RING-variant domain 75 122 IPR011016 GO:0008270
Cla07g01390 262 CDD RING_CH-C4HC3_MARCH 75 123 - -
Cla07g01390 262 SMART ringv_2 74 123 IPR011016 GO:0008270
Cla07g01390 262 ProSiteProfiles Zinc finger RING-CH-type profile. 67 129 IPR011016 GO:0008270
Cla07g01390 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 127 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01069 Cla-Chr6:23193123 Cla07g01390 Cla-Chr7:31024191 3.37E-39 dispersed
Cla07g01390 Cla-Chr7:31024191 Cla11g00700 Cla-Chr11:8790546 8.49E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01390 - - bhj:120075028 519.235