Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01406 ATGGATCATTCTGGGGAAGCCAGTAACCAGAAACCAGCAGTTGAAGTTGCGAAAGACAAGAATGGTGTGGAACAAGTGCTGCTTCGAAACTCTCGAGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTGTCTTGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTACTAAGTCTGGTCCCATTTCGATTCTCACAATTTTTGGGGTTCGTGGAACTCTTGAGGAGCACGGGTTCGCTCGTAACAAGATTTGGAAAATCGATGATAATCCTCCTCCTCTTAATCGGGGTGAAATCAAGGACAAATCCTGCATTGATTTGCTTCTTAAACCTTCTGAAGATGATCTGAAAATATGGCCACATAGTGCTAGAAAGATAGTCAATTCTGATTCGCAACAATCTGTTAAGCTGTTGATTCAGATTGCGAAGGTCTGTTTGGCAGCAGATGGGAATCTCACATTAATATCACGAATTCGGAATATCAATTGCAAGCCTTTCAGTTTCTCCATTGCATTCCACACATATTTCTCCATTTCTGATATCAGTGAGGTGAGAGTTGAGGGGCTTGAGGTTCTTGACTATCTCGACAACTTACACGATAAACAACGTTTCACTGAGCAAGGAGATGCCTTAACATTTGAATCCGAGGTAAAAGCTATTTACCAAAATTGTACTGAAATCGATCGAGTTTATCTTAGTTCTTCAGATCTCATCGCGGTGCTTGATCATGAACGAAAGCGAACATTTGTTATGAGAAGGGAAGGACTTCCAGATGTTGTGGTGTGGAATCCATGGGAGAAGAAAGCAAAATCGATTGTCGATCTCGGGGATGAAGATTACAAACAGATGCTTTGTGTTGATGGAGCTGCAATTGAGAAACCTATTACCTTGAAGCCAGGTGAGGAATGGACTGGCCGCTTAGAACTATCTGTCATCCCCTCGAGTTAA 960 42.29 MDHSGEASNQKPAVEVAKDKNGVEQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKSGPISILTIFGVRGTLEEHGFARNKIWKIDDNPPPLNRGEIKDKSCIDLLLKPSEDDLKIWPHSARKIVNSDSQQSVKLLIQIAKVCLAADGNLTLISRIRNINCKPFSFSIAFHTYFSISDISEVRVEGLEVLDYLDNLHDKQRFTEQGDALTFESEVKAIYQNCTEIDRVYLSSSDLIAVLDHERKRTFVMRREGLPDVVVWNPWEKKAKSIVDLGDEDYKQMLCVDGAAIEKPITLKPGEEWTGRLELSVIPSS 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31255098 31259520 + ClCG07G014830.2 Cla07g01406 277394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01406 319 Gene3D - 18 316 IPR014718 GO:0030246
Cla07g01406 319 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 5 319 - -
Cla07g01406 319 CDD D-hex-6-P-epi_like 26 314 IPR025532 -
Cla07g01406 319 PIRSF PHexose_mutarotase 1 318 IPR025532 -
Cla07g01406 319 SUPERFAMILY Galactose mutarotase-like 19 313 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cla07g01406 319 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 5 319 - -
Cla07g01406 319 Pfam Aldose 1-epimerase 25 127 IPR008183 GO:0005975|GO:0016853
Cla07g01406 319 Pfam Aldose 1-epimerase 150 313 IPR008183 GO:0005975|GO:0016853
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01406 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - csv:101205699 521.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00119 Cla-Chr5:1159887 Cla07g01406 Cla-Chr7:31255098 2.51E-131 dispersed
Cla06g01344 Cla-Chr6:26868872 Cla07g01406 Cla-Chr7:31255098 1.52E-95 dispersed
Cla07g01406 Cla-Chr7:31255098 Cla11g01166 Cla-Chr11:24433500 9.58E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g97 Blo02g01136 . . Bda08g00488 Bpe05g00676 . . . . Cmo16g00612 . . . . . Cpe14g00477 . . . . . . . . Cla07g01406 Cam07g1507 Cec07g1604 Cco07g1561 Clacu07g1497 Cmu07g1467 Cre07g1843 . . . . . . . Cme07g01587 . . . . . . Bma05g00849 . . . . Cma06g01035 Cma16g00563 . . . . . . . . . . . . . . . . . . . Csa04g00635 Chy07g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000273 4 7 4 5 2 4 5 4 4 4 4 4 6 4 5 6 4 8 6 4 4 4 4 4 4 4 4 15 8 4 149