Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01417 ATGGAGAAGGCTATGGCGACCTTCGACAAAGGCACCGTCTGTTCAGCTTGGAACTACTCCGCCAACAGATTAGCCACCGGTTCTGCCGACGGAACCCTCGTCATCTTCGATTCTCCCGACCCTTCTTCCTCCTCCACCTCCTTAACTCGCACCTCAAACTTCAAGGCACATGAGGGTGCAATTATTAAGATTGTTTGGGTCCCTCCGGAGTATGGTGATTCTGTTGCATGCATTTTTTCAGATGGAACTTCATCATTGTGGGAGGAGGTTGTTGAAGATGCCCAGCCTCTACAGTGGAAGCTATGCAAACGCTTCAAAAGTAATTCATCTCAAATCCTAGAGATTCAATTTGGAAATTCCTCCTCTGGTCTAAAAATGATTGCTGCATTTTCAGATGGTCATATAAAAGTTTATGAGCTTACGGATCCTTTGGATTTGAAGAGTTGGCAACTTCAGGCTGAATTTCAGAATGTTATTGATTCCATTTCTACAGTCAGGAAAGCTTCTTGTTCATCTGCAAGTATATCTTGGAATCCACATCGAGGGGAACAACAATCAAGCTTTGTTTTGGCTTTTAGTTCGAATACACCACAGCTTAATTCCGCCAAGGTTTGGGAATTTGATCAGGCTCACCAAAGATGGCTTCCTGTAGCAGAGTTGGCTTTGACTGCAGACAAAGGTGACGAGGTTTATGCTGTTGCGTGGGCGCAAAATATTGGAAGGAAAAATGGGCAGAATAGAATAGCCGAATCTACAATTTCTTTATCATATATAGGTCCTGTTGGACCTGAGTTCAGATGTAGGTCTCAACATCCCAAGTCCTTTAATTTCTTTACATGTCACAAACTTTCTGGGGCAATTCCTGACAACTGTTTGCCATATGAGGTAATAGCTGTTGCAACCCAGAAAGGAATTGCAATATGGCGCCTTGGATTAAGCCCGGACACAGATGGAAGGCTCTCAACAGAAAGAGTTGCTCTGCTTTCTGGGCATAATGGCGAGGTGTGGGAGATGGAGTGGGACATGGGTGGTATGACATTAGCATCAACAGGAAAGGATGGGATGGTACGGTTATGGCAATCCAACCTTAATGGTGTTTGGCACCAACATGCTGCATTTGAGCCCACTTCTTAA 1134 44.53 MEKAMATFDKGTVCSAWNYSANRLATGSADGTLVIFDSPDPSSSSTSLTRTSNFKAHEGAIIKIVWVPPEYGDSVACIFSDGTSSLWEEVVEDAQPLQWKLCKRFKSNSSQILEIQFGNSSSGLKMIAAFSDGHIKVYELTDPLDLKSWQLQAEFQNVIDSISTVRKASCSSASISWNPHRGEQQSSFVLAFSSNTPQLNSAKVWEFDQAHQRWLPVAELALTADKGDEVYAVAWAQNIGRKNGQNRIAESTISLSYIGPVGPEFRCRSQHPKSFNFFTCHKLSGAIPDNCLPYEVIAVATQKGIAIWRLGLSPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLASTGKDGMVRLWQSNLNGVWHQHAAFEPTS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31353402 31359023 + ClCG07G014940.2 Cla07g01417 277405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01417 377 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 1 243 IPR037363 GO:0005198
Cla07g01417 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 360 - -
Cla07g01417 377 SUPERFAMILY WD40 repeat-like 13 361 IPR036322 GO:0005515
Cla07g01417 377 Gene3D - 9 374 IPR015943 GO:0005515
Cla07g01417 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 360 IPR001680 GO:0005515
Cla07g01417 377 Pfam WD domain, G-beta repeat 328 359 IPR001680 GO:0005515
Cla07g01417 377 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 288 376 IPR037363 GO:0005198
Cla07g01417 377 PANTHER NUCLEOPORIN SEH1 288 376 IPR037597 GO:1904263
Cla07g01417 377 PANTHER NUCLEOPORIN SEH1 1 243 IPR037597 GO:1904263
Cla07g01417 377 SMART WD40_4 1 37 IPR001680 GO:0005515
Cla07g01417 377 SMART WD40_4 321 360 IPR001680 GO:0005515
Cla07g01417 377 SMART WD40_4 98 139 IPR001680 GO:0005515
Cla07g01417 377 SMART WD40_4 47 88 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01417 K14299 SEH1; nucleoporin SEH1 - csv:101204248 576.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01417 Cla-Chr7:31353402 Cla10g01396 Cla-Chr10:29053695 2.72E-07 dispersed
Cla07g01417 Cla-Chr7:31353402 Cla09g00008 Cla-Chr9:116918 1.98E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g116 Blo02g01142 . . Bda08g00478 Bpe05g00684 . . . . . . . . . . . . . . . . . . . Cla07g01417 Cam07g1518 Cec07g1614 Cco07g1574 Clacu07g1506 Cmu07g1476 Cre07g1853 Cone8ag0251 Cone12ag0258 . . . . . . . . . . . . Bma05g00861 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00647 Chy07g01163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010676 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32