Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01422 ATGGGCTTCCATTCATTAGCGTTGACTGGTGAGTCAACGTCATTCACCTTCGTTCTCCAGATGCTTTTCAAAATTGCAATCGAAGAACTTGAGCCCTACGATCGAGCTCCTCAGCTTTCTTCCTTGCTTCTTTCAGAAGCATATGCGTTCGATGCTAGTGTAACGACAAGAAAATCTTATTGTTCTTTTACATTTGACGTTATGAAGACTCAGTTTCGTATTTCGGCTGGATTCTTTTTGGTGCTGCTAATTTGTTACTCCACTCGTGTTGATTCAAAGGTGGAAGACAGTGCAAACAACGGTCTAGATTCAAAAACAGCGAGTAAAGCAAATGATGCAAGCAAAGACACCGGGTCTAATAAGGATCTTAATTCTGTTTCTGCTGGTAAGGAAAAGAAGTATGAACATCAAGTAAGTGTCTCAAAGGGGGGTGTTAAGAGCAATGGGGATAAAATTAAGAAGGATCCTGAAAGTAAAACAGTGTCGGAAGAAGGTGCAAATAAAGTAAAGAAGGACGGTGGTTTGAGCGAGGAAGGAAGGAATAAGGGAGAGAAAGACAAGGGAAAGCCGGTAGATAATTCGGTTTCAAAGGAAGCGTCTAAGAGTAGTGGGAAGGGCGAAAGCGAAAGTACAGTATCTTCAGCATCGAAAAGAAAGGATGGGTCTTCGGGTGAGGATTGTGATTCATCAAATAAATGCACTGACGAGGGAAATAAGTTAGTAGCTTGCTTGCGAGTTCCAGGAAATGACTCTCCTCAACTTTCGTTGCTAATCCAGAATAAGGGAACTGGTCCTCTTACTGTGAAAATTTCTGCGCCCGATTTTGTTCATCTGGAGAAGAGTGAAGTTCAACTTCAAAAGAAAGAAGATAAAAAGGTAAAAGTTTCAATCGGTGATGGAGGAGATGGAAATGCTATCGTTCTGACTGCAGGTAGCGGCCGTTGTAGTCTTGATTTTAGGGATCTGATTGCGCACAATAATGCCAAAGATTCTGATAATGTTCCCAAGTCCTCACGGTTCAGCTACCTCACAAAACCACATATTATTGCAATTGTAGCTTTTGCTGTAATTCTGACAATTGCAGCTGCTTCAGTGTTCATCAGCATTCGACGTAAGAATTTTGTAAGTAGCAATTCTAAATATCAAAGGCTGGACATGGAGCTCCCTGTTTCCAATGGAGGCAAATCCATTGCTGACAATAACGATGGATGGGAAAACAGTTGGGATGACAATTGGGATGATGAGACACCACACACCCCTTCCTTGCCTGTTACTCCAAGTCTTTCGTCGAAAGGTCTTGCATCACGACGATTGAATAAGGAGGGCTGGAAAGATTAG 1338 42.15 MGFHSLALTGESTSFTFVLQMLFKIAIEELEPYDRAPQLSSLLLSEAYAFDASVTTRKSYCSFTFDVMKTQFRISAGFFLVLLICYSTRVDSKVEDSANNGLDSKTASKANDASKDTGSNKDLNSVSAGKEKKYEHQVSVSKGGVKSNGDKIKKDPESKTVSEEGANKVKKDGGLSEEGRNKGEKDKGKPVDNSVSKEASKSSGKGESESTVSSASKRKDGSSGEDCDSSNKCTDEGNKLVACLRVPGNDSPQLSLLIQNKGTGPLTVKISAPDFVHLEKSEVQLQKKEDKKVKVSIGDGGDGNAIVLTAGSGRCSLDFRDLIAHNNAKDSDNVPKSSRFSYLTKPHIIAIVAFAVILTIAAASVFISIRRKNFVSSNSKYQRLDMELPVSNGGKSIADNNDGWENSWDDNWDDETPHTPSLPVTPSLSSKGLASRRLNKEGWKD 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31404467 31409613 - ClCG07G014990.2 Cla07g01422 277410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01422 445 MobiDBLite consensus disorder prediction 95 125 - -
Cla07g01422 445 MobiDBLite consensus disorder prediction 418 434 - -
Cla07g01422 445 MobiDBLite consensus disorder prediction 95 232 - -
Cla07g01422 445 MobiDBLite consensus disorder prediction 392 445 - -
Cla07g01422 445 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE ISOFORM X1 68 445 - -
Cla07g01422 445 MobiDBLite consensus disorder prediction 195 218 - -
Cla07g01422 445 MobiDBLite consensus disorder prediction 147 194 - -
Cla07g01422 445 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE ISOFORM X1 68 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01422 - - - csv:101203513 602.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g02149 Cla-Chr10:37106102 Cla07g01422 Cla-Chr7:31404467 1.14E-14 dispersed
Cla11g00543 Cla-Chr11:6159005 Cla07g01422 Cla-Chr7:31404467 5.19E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g127 . Blo03g00244 . . . . . . . Cmo16g00600 . . . . . Cpe14g00464 . . . . . . . . Cla07g01422 Cam07g1523 Cec07g1619 Cco07g1579 Clacu07g1511 Cmu07g1481 Cre07g1858 . Cone12ag0254 . . . . . . . . . . . . . . . . . . Cma16g00549 . . . . . . . . . . . . . . . . . . . Csa04g00652 Chy07g01158 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004374 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 1 41