Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01424 ATGGAGAATCATCTGGTGGAACTCTGCATCGATTCGGCCTGTCGGAGCAAGGACAGCGTCGAGAAATGGCGGAGGCAGAAGCGGAGCCTCGAGCGCTTGCCCTCTCATCTCGCCGATGCTCTCCTTCGCCGTCTACATGCTCGTCGTCTCCTCTATCCTTCTCTTCTCGAAGTTTTCAAATATACCATAGAGGTGGTCGATCTAAGTGGTGAAAATGCGGTTGATTCAGAATGGATGGCCTACTTAGGGTCATTTCGTTACTTGCGATCATTAAACGTTTCCAATTGCCACAGGCTTTCTAGTTCTGGTATATGGACTATTTCAGCTAAGTTCGATCCTTATGTCCTATGCTTGTATAAAGGGATGACTACTTTAAGGGAGTTGAACGTTTCTAGATGTTTGAAAGTTACTGATGCTGGAATTAGGCATCTTTTGTCCATACCAACCTTGGAAAAGCTATGCATTGCCGAGACTGGCATCACTGCACACGGAGTAACACTCCTTTCTTCGTTAAAAACATTGGTGTTCTTGGACTTGGGTGGTCTACCTGTCACCGATCAGGCCCTGAGCTCTCTTCAGGTGCTTACGAAATTACAATACCTTGACCTTTGGGGTAGTAAAATATCTAACAGTGGATCTGATGTTCTTCAAATGTTTCCAAAGTTGAGCTTCCTGAATATAGCTTGGACAAATGTCACAAAGTTCCCGAACTTGCCTCACCTAGAGTGTCTGAACATGAGTAACTGCATTATTGACTCTACACTTAAAGGGCCTGGTGATAAAGTTCCTCTAAGAAAGCTTATTGGCTCAGGAGCAACATTTTCGAATGAGACTGAAGATCTGGCATTTGTTGGACTACATGTCCTATATTATCTGGACTTTTCAAACGCTTCTCTTCACAGATTCTGCTTCTTATCTCATATGCAAGCAGTAGAACATTTAGACCTTAGCTCTACTACCATAGGAGACGATTCAGTTGGATTAATTGCATCTGTTGGAGAAAATTTGAAATATCTAAATCTAAGCTCCACAGCAGTCAGCTCTTCTGGAGTTGGAATTTTAGCTGGAAAAGTAGCCAATCTGGAAACTTTATCATTATCTCATACTATGATTGATGATGCGGTCCTATCATATATAAGTATGATGCCTTCCTTGAAGTCTATTGACCTCAGTGAAACAGACATCAAAGGTTATATACACCTATCAGCTACAGAGAAAATCAAATTTCTTTCATTGACAGAATTGCAAAACCTTGATTGTTTAGAAATGTTGAATCTGGAGCATACTCACGTTGATGATGAATCTCTACGCCCATTATCAAGATTTCGAAAACTGAGTCACTTGATGCTTAGAGGTCCCTCATTTACAGACGTGGCATTGAGCTACTTGTCAATTTTGCCCAAGCTGAAAACTCTCAGCATTCGTGATGCAGTTTTGACCAACCAGGCATTTGATGCACTTAGGCCTGTGGCAACTCTACAAACGATTGACTTGAGAGGTTGTTGGCTCATAACTGAGGGTGGTCTTTCGGGATTTCACAGAAGGTTTCCAAAAATTGAAGTTAGACATGAACATTTCCACTTCTCATCTGATCCAACTTCCTCTGATCGACCTTCAACTTATTCTACTCCAAAGAAATTACAACTGAACCAGAGGAGCAGATCGACGAGCATGTCACCGTACTTTGTAGATCAAAGGTTGAAGTATAGCAAAGAAGAGCTACTTGCGCTACAGTTTTCTTCTCTGTCCCACGGTTCCACATCTGCTCCTGAAATCGGTCAGAAATCTGATAGCTGA 1797 42.18 MENHLVELCIDSACRSKDSVEKWRRQKRSLERLPSHLADALLRRLHARRLLYPSLLEVFKYTIEVVDLSGENAVDSEWMAYLGSFRYLRSLNVSNCHRLSSSGIWTISAKFDPYVLCLYKGMTTLRELNVSRCLKVTDAGIRHLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLDLWGSKISNSGSDVLQMFPKLSFLNIAWTNVTKFPNLPHLECLNMSNCIIDSTLKGPGDKVPLRKLIGSGATFSNETEDLAFVGLHVLYYLDFSNASLHRFCFLSHMQAVEHLDLSSTTIGDDSVGLIASVGENLKYLNLSSTAVSSSGVGILAGKVANLETLSLSHTMIDDAVLSYISMMPSLKSIDLSETDIKGYIHLSATEKIKFLSLTELQNLDCLEMLNLEHTHVDDESLRPLSRFRKLSHLMLRGPSFTDVALSYLSILPKLKTLSIRDAVLTNQAFDALRPVATLQTIDLRGCWLITEGGLSGFHRRFPKIEVRHEHFHFSSDPTSSDRPSTYSTPKKLQLNQRSRSTSMSPYFVDQRLKYSKEELLALQFSSLSHGSTSAPEIGQKSDS 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31441788 31446384 + ClCG07G015010.2 Cla07g01424 277412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01424 598 MobiDBLite consensus disorder prediction 527 557 - -
Cla07g01424 598 SMART LRR_CC_2 85 110 IPR006553 -
Cla07g01424 598 SMART LRR_CC_2 333 357 IPR006553 -
Cla07g01424 598 SMART LRR_CC_2 122 147 IPR006553 -
Cla07g01424 598 SMART LRR_CC_2 442 466 IPR006553 -
Cla07g01424 598 SMART LRR_CC_2 171 195 IPR006553 -
Cla07g01424 598 Pfam Leucine Rich repeat 123 144 IPR001611 GO:0005515
Cla07g01424 598 Gene3D Ribonuclease Inhibitor 270 401 IPR032675 -
Cla07g01424 598 PANTHER F-BOX/LRR-REPEAT PROTEIN 13 2 591 - -
Cla07g01424 598 SUPERFAMILY RNI-like 360 510 - -
Cla07g01424 598 Gene3D Ribonuclease Inhibitor 160 267 IPR032675 -
Cla07g01424 598 MobiDBLite consensus disorder prediction 532 557 - -
Cla07g01424 598 SUPERFAMILY RNI-like 67 396 - -
Cla07g01424 598 Gene3D Ribonuclease Inhibitor 8 159 IPR032675 -
Cla07g01424 598 Gene3D Ribonuclease Inhibitor 402 524 IPR032675 -
Cla07g01424 598 PANTHER RECEPTOR-LIKE PROTEIN 14 2 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01424 - - - bhj:120068781 1030.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01424 Cla-Chr7:31441788 Cla02g01397 Cla-Chr2:28459551 1.21E-08 dispersed
Cla07g01424 Cla-Chr7:31441788 Cla09g00277 Cla-Chr9:2713234 3.05E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g130 . . . . . . . Bma14g00633 . . . . . . . . . . . . . . . . Cla07g01424 Cam07g1525 Cec07g1621 Cco07g1581 Clacu07g1513 Cmu07g1483 Cre07g1860 . . . Cone9ag0850 . . . . . . Bda07g00458 . . Bpe11g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00655 Chy07g01156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005843 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 7 1 39