Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01426 ATGGCCGTCTCCAAATTCTCCGTCGCCGTCCTCCTCCTCTTAGCCTTTTTATTCATTAACGGAGCCGAATCTCAGTTTCTTTGCAAAAGCTCCTCCTGCAATGGAGTTTCCTCGCCGGACGTTCGATTTCCGTTCCGACTGAAGAATTCGCAGGATTCTCGGTGTGGATACCAGCCAGATTTCGACCTGTTCTGCAACAATCGAAACCAGACGATTCTGAATCTCCCGAACGCCGGAGACCTCGTAGTGGAGATTATCGATTACAGGTTTCAGAGGTTGTGGATCAACGATCCGGATCAATGCTTTCCGAGACGAATACTAATAGACTCTTTCAATTTAGAGAACTCGCCGTTCATTTATAATTATCGATTCGATGAATTCACCGTTCTCAACTGCTCCTATTACGTCCAAACGCTACCGTTCGATCGCGTCCGGAAGATCAAATGTATGAGCGGCGGAAACCACACTGTAATCAATGTGCCAAACAGAGACCTAAAGGCGGTTACAGATTTCCTACCGTCGCCGTGTAAAGTGATTGCGACGAAGAAGCTTCCGTTAACAGGAATGGAGCTTGAAGAAGGAATGGTGGTGAGGTGGAGTGAGCCGGCTTGCGGAAACTGCGAGACGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGGTGAAGTCGTGTGTTTCAATCTTCCAAAAAGCGGAGTCCTCTTCATAATTGGGTTGGTCTGTTACATTTGTGGCAGGTTCAAGGCCTTTGCCCGACCCAATCGTCCAACATCACACCTTTCTCTTTCGTTGGGCCACCAACCCACTTTTACCAAAGCAGGCCTCGACGGTTCGACAATTGAATCATTCCCCAAGACAACACTGGGGCAGAGCAGACGACTTCCAAAGTCCAACGACACCACATGCGCCATATGCTTGTCAGAGTACCAGTCAAAGGAGACAATTAGAACCATACCAGATTGTGGTCACTTTTTCCATGCCAAATGCATTGATGAGTGGCTTAAATTGAACGCCACGTGTCCAGTCTGTCGGACCTCGCCCGAGGATTCCTCTTGCACCTCCACGCCTTCTCAATCCATGTCAGTGCCAACGTCGCCGCAATCGATGCAATGGTGTGGACCCCTTCGTCGTGAAACAACAACATATTATGATATAGGCAAAAAGGACTTTTCAATAGAATATTATTTCCCTTCTAAACCCAAAACCCTTATTTGCATCTCTTCGTACGCGCCACGCTTCGATTCCGGCCTCCTCCCTTCTCCGCTTCAGTCCTTGCGATCGCCGGCGAGCTCACAGTCAGTGTTCGTTCTCGATCTGGAAGTAGGGAAAAAAGGAGGAAGGTTGCTCTATGAGTCAGTTGAGGTAGACGGGTGTTATTTCAGTGGAAAAAAGATCGAATTCATTTTAGAAGAACTGTCAATGGCTTATAGGCGCAGCCTTTGCTCAAGAGCAAATCTTATAGCTCGACAGTGCCATCCATCAATTAGTGTTTTTGGTCAAACGGATGACCGTAAAAAGCAACATTTGGATGAAGATTCAATTTCCCATGACAAAGTCAATAGTTTCCTGCAGAGGAGATCATTTGGAACCAGCTTTAATAAGTCGTCCAGGTCTAACTTTTTTGCTCACGATAGACAATATCCAAACACTTTCCTCTCGTCAAGCGCTGGTTTCCTTTTCTGTCGCTACATGTCAAGTACTATTGGTGAAGGGTCTGAAAAAATTGAATTCATGAGTAATGTTGCAGAAGTTCTCACAGATACAACAGTTCAATCGGCAGCATCTCAGGCTACTGCTGCTAATGAAGTAGCCATTGCTGCTGCTGATTCTTTTCTCCCGGTCAAGGGTGTGCAGTACTTTATAGATGGTATTCATTCTTTTACTGGATTAAATTGGTGGGCTTGCATTGTATTAACAACCCTACTGATTCGTGGTGCAACAGTCCCTCTTTTGATAAATCAACTCAAATCTACTGCCAAGCTTACTTTGTTAAGGCCTCACTTGGAGGAAGTTAAGAACGAGATGCAAGAAAAGGGTATGGATCCAAGGGCTGTTGCTGAGGGTCAACAAAAAATGAAAAAACTTTTTAATGAAATAGTGGTTCTAGGGTTAGGAGAGATTATCAGAATTCTCAAAATTGCTGATTATCGTGATCTTGATATTGTAAACGTTGTGAACTTTGTGTTTTGGTTTGGTGTGAGCCCATTTACCCCATTGAAGGGACTTTTTATTCAGGGTCCTGTCTTCATCAGCTTTTTCCTCGCAGTTACAAACATGGCAGAGAAAATGCCTTCATTTAAAAATGGTGGAGCATACTGGTTTGTTGATCTCACGACTCCAGATACGATGTACATTTTCCCAGTTTTAACCGCGCTCACATTCTGGATCACAGTGGAGGTAGACATTCGTAAATTTGTTTTTGTCTACTATTGCAACTTGCAAGAAGGTTTGGAAGGTAATCCTGTTGCTAGCACAATGAAAAATGTGATGAGGGGTCTTGCTATTGCTACGGTTCCCTTGACCATGAATTTTCCAAAGGCAATATTCTGTTACTGGGTTACATCTAATTTGTTCTCACTTGTATACGGGGCTGCTCTCAAAGTTCCTGGGGTTAAGAAGGCCTTGGGTGTTCCTGAAATACCAGTGGCCAATACGAACACGACTCCGCGACCTGCCTTCTCATTTCTTACAGCTATGAAACAAGCAACAGCAGCATCCAATGAAGCTACCACGACAACATTAACCGCTCAACCGTCACAGTCCCAAGACCGAAAAATTTCATCATCGTCAGTCATTAGCCAGAGGCTTAGAAGTTTGGAGAAAGAAGTGAAGGGAAGGAGAAAGATGAAGAATAAGAAAAAGTGA 2868 44.7 MAVSKFSVAVLLLLAFLFINGAESQFLCKSSSCNGVSSPDVRFPFRLKNSQDSRCGYQPDFDLFCNNRNQTILNLPNAGDLVVEIIDYRFQRLWINDPDQCFPRRILIDSFNLENSPFIYNYRFDEFTVLNCSYYVQTLPFDRVRKIKCMSGGNHTVINVPNRDLKAVTDFLPSPCKVIATKKLPLTGMELEEGMVVRWSEPACGNCETRGGDCGFKSNSSGEVVCFNLPKSGVLFIIGLVCYICGRFKAFARPNRPTSHLSLSLGHQPTFTKAGLDGSTIESFPKTTLGQSRRLPKSNDTTCAICLSEYQSKETIRTIPDCGHFFHAKCIDEWLKLNATCPVCRTSPEDSSCTSTPSQSMSVPTSPQSMQWCGPLRRETTTYYDIGKKDFSIEYYFPSKPKTLICISSYAPRFDSGLLPSPLQSLRSPASSQSVFVLDLEVGKKGGRLLYESVEVDGCYFSGKKIEFILEELSMAYRRSLCSRANLIARQCHPSISVFGQTDDRKKQHLDEDSISHDKVNSFLQRRSFGTSFNKSSRSNFFAHDRQYPNTFLSSSAGFLFCRYMSSTIGEGSEKIEFMSNVAEVLTDTTVQSAASQATAANEVAIAAADSFLPVKGVQYFIDGIHSFTGLNWWACIVLTTLLIRGATVPLLINQLKSTAKLTLLRPHLEEVKNEMQEKGMDPRAVAEGQQKMKKLFNEIVVLGLGEIIRILKIADYRDLDIVNVVNFVFWFGVSPFTPLKGLFIQGPVFISFFLAVTNMAEKMPSFKNGGAYWFVDLTTPDTMYIFPVLTALTFWITVEVDIRKFVFVYYCNLQEGLEGNPVASTMKNVMRGLAIATVPLTMNFPKAIFCYWVTSNLFSLVYGAALKVPGVKKALGVPEIPVANTNTTPRPAFSFLTAMKQATAASNEATTTTLTAQPSQSQDRKISSSSVISQRLRSLEKEVKGRRKMKNKKK 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31467728 31481747 - ClCG07G015030.2 Cla07g01426 277414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01426 955 MobiDBLite consensus disorder prediction 910 937 - -
Cla07g01426 955 ProSiteProfiles Zinc finger RING-type profile. 303 345 IPR001841 -
Cla07g01426 955 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 6 353 - -
Cla07g01426 955 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Cla07g01426 955 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 349 IPR013083 -
Cla07g01426 955 MobiDBLite consensus disorder prediction 910 955 - -
Cla07g01426 955 CDD RING-H2_PA-TM-RING 302 345 - -
Cla07g01426 955 SMART ring_2 303 344 IPR001841 -
Cla07g01426 955 Pfam 60Kd inner membrane protein 733 862 IPR001708 GO:0016021|GO:0032977
Cla07g01426 955 Pfam Ring finger domain 302 345 IPR001841 -
Cla07g01426 955 Pfam Wall-associated receptor kinase C-terminal 188 227 IPR032872 -
Cla07g01426 955 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 353 - -
Cla07g01426 955 SUPERFAMILY RING/U-box 297 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01426 K03217 yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase - csv:101223070 676.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01426 Cla-Chr7:31467728 Cla08g01070 Cla-Chr8:23395346 1.44E-28 dispersed
Cla11g00709 Cla-Chr11:9614474 Cla07g01426 Cla-Chr7:31467728 3.92E-12 dispersed
Cla01g01481 Cla-Chr1:29326564 Cla07g01426 Cla-Chr7:31467728 1.84E-22 transposed
Cla08g01288 Cla-Chr8:25762056 Cla07g01426 Cla-Chr7:31467728 1.39E-12 transposed
Cla10g01731 Cla-Chr10:33126627 Cla07g01426 Cla-Chr7:31467728 6.56E-20 transposed
Cla05g00960 Cla-Chr5:9597153 Cla07g01426 Cla-Chr7:31467728 3.61E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003609 1 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 3 4 1 47