Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01472 ATGAGAAGACGGCAAAAGGAGGCTCGAAACAACATTACAAGTGGATCCCTCAAAGAGCAAGCACACTTAAAAGCCGAGAACACTCCGTCATATCAACCGGCCTTTCCCTGTACCCGGTCATTAATTCTCCCTCCCGTGATCGCACGTACGGCGTTCCGGTTAGAGAAAAGTGAGCGCGAGCGGCTGGCGATGGCGGAGGTTGTAGAAAGGGAAGAGGTGACTCTCCAGAAATTGAAGACGATGATGGCGGACTTTGCGAAAGAGAGAGACTGGGATCCGTTTCACAGCCCTAGAAATCTCCTCCTCGCTATGGTGGGTGAAGTGGGTGAGTTATCTGAGATATTCCAGTGGAAAGGGGAAGTTCCAAGAGGCCTTCCTGACTGGAAAGATGAAGAGAAACAACATCTTGGGGAAGAACTCTCAGATGTTTTGCTGTACCTTGTTAGGCTTGCTGATATTTGTGGGATTGATCTTGGCAAAGCAGTTCTAAGGAAGCTGGAGCTGAATGCGAAGAAATATCCAGTCAAGCTTTGCAAAGGGTCTTCACGAAAACACACAGAAATCAGCTGTTGTGAAGACGATTTCAATGAAAACGGTGGAAAGGAAGACCCCACCAATTAG 621 48.15 MRRRQKEARNNITSGSLKEQAHLKAENTPSYQPAFPCTRSLILPPVIARTAFRLEKSERERLAMAEVVEREEVTLQKLKTMMADFAKERDWDPFHSPRNLLLAMVGEVGELSEIFQWKGEVPRGLPDWKDEEKQHLGEELSDVLLYLVRLADICGIDLGKAVLRKLELNAKKYPVKLCKGSSRKHTEISCCEDDFNENGGKEDPTN 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32000199 32003842 + ClCG07G015510.2 Cla07g01472 277460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01472 206 Gene3D - 64 179 - -
Cla07g01472 206 CDD NTP-PPase_RS21-C6_like 79 169 IPR025984 GO:0009143|GO:0047429
Cla07g01472 206 PANTHER DCTP PYROPHOSPHATASE 1 57 190 - -
Cla07g01472 206 Coils Coil 68 88 - -
Cla07g01472 206 Pfam MazG-like family 107 187 IPR025984 GO:0009143|GO:0047429
Cla07g01472 206 SUPERFAMILY all-alpha NTP pyrophosphatases 74 187 - -
Cla07g01472 206 PANTHER - 57 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01472 K16904 DCTPP1; dCTP diphosphatase [EC:3.6.1.12] - csv:101213795 245.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01565 Cla-Chr6:29206037 Cla07g01472 Cla-Chr7:32000199 1.28E-49 dispersed
Cla07g01472 Cla-Chr7:32000199 Cla09g00767 Cla-Chr9:7677653 2.76E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1065 Blo01g00274 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01074 . . . . . . . . . . . . . . . . . . . Cla07g01472 Cam07g1572 Cec07g1671 Cco07g1632 Clacu07g1563 Cmu07g1531 Cre07g1907 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002028 4 1 2 4 4 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 2 1 2 3 2 1 65