Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01473 ATGCCAATCTTTGCTACAACTCTCCCATCTCTCTCTGCTCCTTCCTTTCTCTCACTCTTCCCCTCCATTGATGCTTCTCACTCCCCTTCAACCTCCTTCCTTTTACCCCTTAAATCCCCTTCTACACGCCCTTCTAACTTCCCTTCCAGAGTTTCCCTCTCCGGAAAACCCGACCCCCTTGCTGCCGGACTTCTAGACACTTCCCCTTCCTCCCCGGAATCACTTCGACGTGCTCGGAGATCTGCTGATTGGAAGGCAGCGAGGGAATTCCTTGATAATGGATTTATCTACGAGGGTAGGATTGAAGGTTCAAACGCTGGAGGTTTACTTGTCCGATTCTATTCTCTTATGGGGTTTCTTCCATTCCCTCAATTGAGCCCGTCTCATTCTTGTAAAGAACCATACAAGAGTATTCAAGATATTGCAAAAAGCTTAATTGGTTCGCTTATACCAGTGAAGAGAGTCCCAGACGTGTCAAGCTTCCACCTGGCACCATCAAAGCCCCTCCCAAATTGCACCGACTCAAGTAAGCCTGTGAACACAGCCCATCTTGCTGCAGGAACAATAATACATTGCTTAGTGCCATCATGGGATAGTGAAGTGATTTCTTCAAATCAACCACTGGTAATCCAAGCAGATGAGAGAAACAAGAAATTGATATTTTCAGAGAAGGAAGCTGCGTGGTCAAAGTTTTCTGAGCAAGTTGGTGTAGGAGATGTGTATGAAGCTAGAGTTGGATCTGTGGAGGATTATGGTGCCTTTGTACATCTACGTTTCTCTGATGGTAATATTTTGTGTTCTATTAAATTATTAATCTTATTCGCTGATGTATTTAGAAACAAATTGCCACTTACTTTCCAAAATTCTGCAGGTCTTTATCATCTTACTGGGCTAGTACATGTATCAGAAGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATATTAAGTGAGGGTGACGAAGTGACAGTGAAAGTCATTAATGTTGATAGGCAAATAGGGAAGTTAGTTAGTAAAGATAAGTCCAGGATCACATTGTCAATCAAGCAACTCGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTAATACCCCAGGATGGTTCTGCTGAACCTGATTCTTTCGGACCTAAAAGCGACAGTGAAATTATACCCCTACCTGGACTTGAAACAATAATTGAAGAGCTACTGCAGGAAGATGGTTTGAATATCAGTATAGTAGATGTTCGTGTCAACCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATGCACCTCCAGTTGAAAAGAAGTTCACTCTCCTTGCTCGTGCCGGGAGGCAGGTTCAAGAAATACAGCTGACAACATCACTCGATCAGGAAGGTATAAAAAGAGCATTGCAGCGAGTGTTGGAACGTGTCCCATGA 1428 43.35 MPIFATTLPSLSAPSFLSLFPSIDASHSPSTSFLLPLKSPSTRPSNFPSRVSLSGKPDPLAAGLLDTSPSSPESLRRARRSADWKAAREFLDNGFIYEGRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLIPVKRVPDVSSFHLAPSKPLPNCTDSSKPVNTAHLAAGTIIHCLVPSWDSEVISSNQPLVIQADERNKKLIFSEKEAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGNILCSIKLLILFADVFRNKLPLTFQNSAGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVDRQIGKLVSKDKSRITLSIKQLEEDPLLETLDKVIPQDGSAEPDSFGPKSDSEIIPLPGLETIIEELLQEDGLNISIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTSLDQEGIKRALQRVLERVP 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32013709 32019604 - ClCG07G015520.2 Cla07g01473 277461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01473 475 MobiDBLite consensus disorder prediction 36 52 - -
Cla07g01473 475 MobiDBLite consensus disorder prediction 36 57 - -
Cla07g01473 475 Gene3D - 233 357 IPR012340 -
Cla07g01473 475 SUPERFAMILY Nucleic acid-binding proteins 233 358 IPR012340 -
Cla07g01473 475 PANTHER OS03G0844900 PROTEIN 209 263 - -
Cla07g01473 475 PANTHER OS03G0844900 PROTEIN 14 155 - -
Cla07g01473 475 PANTHER OS03G0844900 PROTEIN 287 475 - -
Cla07g01473 475 Pfam S1 RNA binding domain 293 336 IPR003029 GO:0003676
Cla07g01473 475 ProSiteProfiles S1 domain profile. 238 349 IPR003029 GO:0003676
Cla07g01473 475 SMART S1_6 236 349 IPR022967 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01473 - - - cmax:111479406 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01473 Cla-Chr7:32013709 Cla01g00284 Cla-Chr1:2995230 2.62E-14 dispersed
Cla07g01473 Cla-Chr7:32013709 Cla05g00723 Cla-Chr5:6813697 2.53E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0899 . . . . . . Blo07g00072 . . . . . . . . . . . . . . . . . . . . . . Cla07g01473 Cam07g1573 Cec07g1672 Cco07g1633 Clacu07g1564 Cmu07g1532 Cre07g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011616 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30