Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01491 ATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATCGATGAAGCTGGTCGAGGCCCCGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGGTTTAGCTTCTTTGCAATTTTTTCTTTTAACTGTCGTTCATCATTTACCTATTTCGTTTACTTCTCTTCCAACTTTTGATGTTTTGCATTTAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACGGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGATTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGGAGTCGGACAAAGTGGATGAAGATGGGGGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTTTGA 987 40.73 MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFFLLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQARKLEQLTHF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32157271 32160985 + ClCG07G015650.1 Cla07g01491 277479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01491 328 Gene3D Ribonuclease hii. Domain 2 218 265 IPR023160 GO:0004523
Cla07g01491 328 Gene3D - 1 217 IPR036397 GO:0003676
Cla07g01491 328 SUPERFAMILY Ribonuclease H-like 15 264 IPR012337 -
Cla07g01491 328 CDD RNase_HII_eukaryota_like 17 264 - -
Cla07g01491 328 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 267 IPR024567 GO:0004523
Cla07g01491 328 TIGRFAM TIGR00729: ribonuclease HII 83 259 IPR004649 GO:0004523|GO:0016070
Cla07g01491 328 Pfam Ribonuclease HII 84 258 IPR024567 GO:0004523
Cla07g01491 328 Pfam Ribonuclease HII 17 51 IPR024567 GO:0004523
Cla07g01491 328 PANTHER RIBONUCLEASE H2 SUBUNIT A 7 54 IPR001352 GO:0003723|GO:0004523
Cla07g01491 328 PANTHER RIBONUCLEASE H2 SUBUNIT A 83 327 IPR001352 GO:0003723|GO:0004523
Cla07g01491 328 PANTHER RIBONUCLEASE 7 54 - -
Cla07g01491 328 PANTHER RIBONUCLEASE 83 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02220 Cla-Chr5:33868431 Cla07g01491 Cla-Chr7:32157271 5.35E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01491 K10743 - csv:101210143 560.066