Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01491 ATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATCGATGAAGCTGGTCGAGGCCCCGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGGTTTAGCTTCTTTGCAATTTTTTCTTTTAACTGTCGTTCATCATTTACCTATTTCGTTTACTTCTCTTCCAACTTTTGATGTTTTGCATTTAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACGGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGATTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGGAGTCGGACAAAGTGGATGAAGATGGGGGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTTTGA 987 40.73 MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFFLLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQARKLEQLTHF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32157271 32160985 + ClCG07G015650.1 Cla07g01491 277479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01491 328 Gene3D Ribonuclease hii. Domain 2 218 265 IPR023160 GO:0004523
Cla07g01491 328 Gene3D - 1 217 IPR036397 GO:0003676
Cla07g01491 328 SUPERFAMILY Ribonuclease H-like 15 264 IPR012337 -
Cla07g01491 328 CDD RNase_HII_eukaryota_like 17 264 - -
Cla07g01491 328 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 267 IPR024567 GO:0004523
Cla07g01491 328 TIGRFAM TIGR00729: ribonuclease HII 83 259 IPR004649 GO:0004523|GO:0016070
Cla07g01491 328 Pfam Ribonuclease HII 84 258 IPR024567 GO:0004523
Cla07g01491 328 Pfam Ribonuclease HII 17 51 IPR024567 GO:0004523
Cla07g01491 328 PANTHER RIBONUCLEASE H2 SUBUNIT A 7 54 IPR001352 GO:0003723|GO:0004523
Cla07g01491 328 PANTHER RIBONUCLEASE H2 SUBUNIT A 83 327 IPR001352 GO:0003723|GO:0004523
Cla07g01491 328 PANTHER RIBONUCLEASE 7 54 - -
Cla07g01491 328 PANTHER RIBONUCLEASE 83 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01491 K10743 RNASEH2A; ribonuclease H2 subunit A [EC:3.1.26.4] - csv:101210143 560.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02220 Cla-Chr5:33868431 Cla07g01491 Cla-Chr7:32157271 5.35E-13 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00013 . 1 94 Core DNA Replication Machinery Family AT4G14700 75.5 1.5e-37 155.2
Cla08g00013 . 1 94 Core DNA Replication Machinery Family AT4G12620 78.7 2.4e-38 157.9
Cla08g01551 . 2 390 Core DNA Replication Machinery Family AT2G37560 60.7 1.9e-138 489.2
Cla07g00440 . 9 451 Core DNA Replication Machinery Family AT2G01120 55.2 2.0e-129 459.5
Cla06g00340 . 89 622 Core DNA Replication Machinery Family AT4G29910 58.2 9.2e-175 610.5
Cla11g00892 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 4.0e-94 341.7
Cla09g02206 . 68 839 Core DNA Replication Machinery Family AT1G79150 57.7 1.4e-235 813.1
Cla10g01241 . 8 946 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1346.6
Cla01g02393 . 83 595 Core DNA Replication Machinery Family AT5G46280 84.1 1.5e-249 859.0
Cla02g00495 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cla11g00330 . 963 1697 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cla01g02533 . 7 869 Core DNA Replication Machinery Family AT5G44635 65.0 0.0e+00 1080.1
Cla09g00472 . 45 763 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cla02g01918 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.6e-163 571.2
Cla02g01918 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.7e-143 505.8
Cla09g00820 . 323 915 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cla10g01954 . 12 826 Core DNA Replication Machinery Family AT3G09660 69.0 2.4e-309 1058.1
Cla09g01540 . 9 635 Core DNA Replication Machinery Family AT2G14050 79.5 4.4e-290 993.8
Cla09g01539 . 19 120 Core DNA Replication Machinery Family AT2G14050 74.5 2.6e-40 164.1
Cla02g01165 . 1909 2314 Core DNA Replication Machinery Family AT2G20980 51.4 6.2e-101 364.8
Cla09g00243 CCT,ECH 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.1e-72 270.0
Cla11g00591 . 1 184 Core DNA Replication Machinery Family AT1G19080 68.5 2.0e-70 262.3
Cla11g00591 . 1 184 Core DNA Replication Machinery Family AT3G55490 68.5 2.0e-70 262.3
Cla05g00156 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.6e-49 193.0
Cla02g01214 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1769.2
Cla04g01144 . 99 694 Core DNA Replication Machinery Family AT1G67630 54.7 5.5e-189 657.9
Cla06g00192 . 363 763 Core DNA Replication Machinery Family AT1G67320 65.3 3.5e-170 595.1
Cla08g00153 . 7 430 Core DNA Replication Machinery Family AT5G41880 65.5 1.6e-169 592.8
Cla01g01486 . 1 1033 Core DNA Replication Machinery Family AT5G63960 78.5 0.0e+00 1643.6
Cla10g01668 . 29 575 Core DNA Replication Machinery Family AT2G42120 60.5 4.1e-186 647.9
Cla06g00192 . 363 763 Core DNA Replication Machinery Family AT1G67320 65.3 3.5e-170 595.1
Cla01g00535 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.4e-37 151.4
Cla02g02143 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Cla09g02001 . 1 1737 Core DNA Replication Machinery Family AT1G08260 66.5 0.0e+00 2332.4
Cla02g02143 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Cla09g02001 . 1 1844 Core DNA Replication Machinery Family AT2G27120 64.0 0.0e+00 2351.2
Cla04g01237 . 530 980 Core DNA Replication Machinery Family AT5G22110 69.8 1.1e-182 636.7
Cla02g02185 . 228 973 Core DNA Replication Machinery Family AT5G22010 72.2 1.6e-301 1032.3
Cla10g00332 . 1 203 Core DNA Replication Machinery Family AT1G63160 91.6 2.0e-105 379.4
Cla04g00481 . 73 444 Core DNA Replication Machinery Family AT5G27740 76.3 1.1e-162 569.7
Cla11g01553 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 4.5e-153 537.7
Cla08g00608 . 1 412 Core DNA Replication Machinery Family AT1G77470 66.4 5.3e-147 517.7
Cla11g00142 . 26 587 Core DNA Replication Machinery Family AT2G06510 67.7 8.4e-238 820.1
Cla10g00108 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 1.0e-195 680.2
Cla06g01537 . 1 643 Core DNA Replication Machinery Family AT5G08020 66.1 4.1e-245 844.3
Cla10g00108 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 1.8e-227 786.2
Cla06g01537 . 1 638 Core DNA Replication Machinery Family AT5G61000 64.0 3.2e-237 818.1
Cla10g00108 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 3.0e-224 775.4
Cla03g01715 . 1 386 Core DNA Replication Machinery Family AT5G26680 78.5 4.7e-176 614.4
Cla07g01491 . 1 328 Core DNA Replication Machinery Family AT2G25100 60.7 1.0e-110 396.7
Cla02g02101 . 44 890 Core DNA Replication Machinery Family AT1G08130 62.1 7.1e-282 966.8
Cla02g02101 . 204 890 Core DNA Replication Machinery Family AT1G49250 60.3 9.2e-227 783.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012218 1 1 1 2 1 1 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 28