Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01523 ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAACTTTCTGTTCTTTGTGATGCCGAAGTTGCTCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACAAAACCGGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTTTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAACTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTGTCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAAATAAAGCTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTTACATGGGAAGGTGGAGACCAAAGTATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTAGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACCACTGCTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 741 43.18 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTSAVSDQITSTTAPTHAQQVNGFLPGWML 246
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 32406091 32413405 + ClCG07G016020.2 Cla07g01523 277511
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01523 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla07g01523 246 Coils Coil 150 170 - -
Cla07g01523 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla07g01523 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla07g01523 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla07g01523 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla07g01523 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla07g01523 246 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla07g01523 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cla07g01523 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cla07g01523 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla07g01523 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Cla07g01523 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cla07g01523 246 Coils Coil 121 144 - -
Cla07g01523 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Cla07g01523 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01140 Cla-Chr4:26590560 Cla07g01523 Cla-Chr7:32406091 4.48E-79 dispersed
Cla05g00830 Cla-Chr5:8142021 Cla07g01523 Cla-Chr7:32406091 2.36E-57 dispersed
Cla06g00195 Cla-Chr6:2321007 Cla07g01523 Cla-Chr7:32406091 2.50E-113 dispersed
Cla06g00196 Cla-Chr6:2343242 Cla07g01523 Cla-Chr7:32406091 2.09E-26 dispersed
Cla07g01523 Cla-Chr7:32406091 Cla08g01053 Cla-Chr8:23220342 2.40E-88 dispersed
Cla10g01155 Cla-Chr10:26113807 Cla07g01523 Cla-Chr7:32406091 5.61E-39 dispersed
Cla07g01523 Cla-Chr7:32406091 Cla07g01524 Cla-Chr7:32430415 2.71E-54 tandem
Cla11g01559 Cla-Chr11:29321179 Cla07g01523 Cla-Chr7:32406091 2.65E-37 transposed
Cla04g01139 Cla-Chr4:26574685 Cla07g01523 Cla-Chr7:32406091 3.84E-58 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61484 PF01486 K-box 2.70E-27 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01523 K09264 - csv:101208204 472.241