Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g01523 | ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAACTTTCTGTTCTTTGTGATGCCGAAGTTGCTCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACAAAACCGGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTTTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAACTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTGTCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAAATAAAGCTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTTACATGGGAAGGTGGAGACCAAAGTATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTAGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACCACTGCTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA | 741 | 43.18 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTSAVSDQITSTTAPTHAQQVNGFLPGWML | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 32406091 | 32413405 | + | ClCG07G016020.2 | Cla07g01523 | 277511 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g01523 | 246 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01523 | 246 | Coils | Coil | 150 | 170 | - | - | |
Cla07g01523 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01523 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01523 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01523 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01523 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01523 | 246 | Pfam | K-box region | 84 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla07g01523 | 246 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cla07g01523 | 246 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Cla07g01523 | 246 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla07g01523 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 231 | - | - | |
Cla07g01523 | 246 | SUPERFAMILY | SRF-like | 2 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Cla07g01523 | 246 | Coils | Coil | 121 | 144 | - | - | |
Cla07g01523 | 246 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 1 | 231 | - | - | |
Cla07g01523 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g01140 | Cla-Chr4:26590560 | Cla07g01523 | Cla-Chr7:32406091 | 4.48E-79 | dispersed | |
Cla05g00830 | Cla-Chr5:8142021 | Cla07g01523 | Cla-Chr7:32406091 | 2.36E-57 | dispersed | |
Cla06g00195 | Cla-Chr6:2321007 | Cla07g01523 | Cla-Chr7:32406091 | 2.50E-113 | dispersed | |
Cla06g00196 | Cla-Chr6:2343242 | Cla07g01523 | Cla-Chr7:32406091 | 2.09E-26 | dispersed | |
Cla07g01523 | Cla-Chr7:32406091 | Cla08g01053 | Cla-Chr8:23220342 | 2.40E-88 | dispersed | |
Cla10g01155 | Cla-Chr10:26113807 | Cla07g01523 | Cla-Chr7:32406091 | 5.61E-39 | dispersed | |
Cla07g01523 | Cla-Chr7:32406091 | Cla07g01524 | Cla-Chr7:32430415 | 2.71E-54 | tandem | |
Cla11g01559 | Cla-Chr11:29321179 | Cla07g01523 | Cla-Chr7:32406091 | 2.65E-37 | transposed | |
Cla04g01139 | Cla-Chr4:26574685 | Cla07g01523 | Cla-Chr7:32406091 | 3.84E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61484 | PF01486 | K-box | 2.70E-27 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g01523 | K09264 | - | csv:101208204 | 472.241 |