Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g01524 | ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAGATCAGTCGCCAAGTCACTTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGAGGCTGATGTTGCTTTGATTGTCTTCTCCACTAAAGGCAAACTCTTTGAGTACTCTTCTGATTCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTGTTATGCAGAGAAACCATTGGCCCCAAATGGAGATCCTGAATTACAGAACACTGATCTTGCTAGTACAGTTTATTGGCTGTATTGTCTTGTCCTTTTATTGGTAAGTTGGTGTCAGGAGTATCCAAAACTTGCAGCCAGATTGGAAATTATACAGAAGAACTTAAGGCATTATTTGGGAGAAGAACTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATACATCACTCAAGCGCATAAGATCAAGAAAGAACCAACTAATGCAAGAATCCATTTCAACACTACACAAAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTTGCAAATAAGGTGAAAGAGAATGAGAAGGGTTTGGTTGAACGTGGACAATGCGATGACCTCCCAAACTTGGTTCGTAATCAGCCCATTTTTGCAATGCCGTCACCAATTATTCCTTCTTTATCTATTGGAGTAAACTTGCATGGGAGAGGATCAGATGAAGATGAAACAAGGGCAACAAGCGTCAACAACATCCAAATACCAGCGTGGATGCTTAGCCATGTGACTGAAAATCCTCATAACTAA | 804 | 40.8 | MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYCYAEKPLAPNGDPELQNTDLASTVYWLYCLVLLLVSWCQEYPKLAARLEIIQKNLRHYLGEELDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISTLHKKERELQEENRQLANKVKENEKGLVERGQCDDLPNLVRNQPIFAMPSPIIPSLSIGVNLHGRGSDEDETRATSVNNIQIPAWMLSHVTENPHN | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 32430415 | 32436531 | + | ClCG07G016030.2 | Cla07g01524 | 277512 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g01524 | 267 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | PANTHER | BNAA09G02740D PROTEIN | 1 | 89 | - | - | |
Cla07g01524 | 267 | PANTHER | BNAA09G02740D PROTEIN | 108 | 233 | - | - | |
Cla07g01524 | 267 | SUPERFAMILY | SRF-like | 2 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | Coils | Coil | 144 | 197 | - | - | |
Cla07g01524 | 267 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cla07g01524 | 267 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | ProSiteProfiles | K-box domain profile. | 107 | 197 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla07g01524 | 267 | Gene3D | - | 13 | 82 | IPR036879 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | Pfam | K-box region | 109 | 191 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla07g01524 | 267 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g01524 | 267 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 89 | - | - | |
Cla07g01524 | 267 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 108 | 233 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02508 | Cla-Chr1:38740495 | Cla07g01524 | Cla-Chr7:32430415 | 2.05E-37 | dispersed | |
Cla04g01139 | Cla-Chr4:26574685 | Cla07g01524 | Cla-Chr7:32430415 | 8.64E-88 | dispersed | |
Cla07g01524 | Cla-Chr7:32430415 | Cla08g01054 | Cla-Chr8:23240146 | 2.55E-58 | dispersed | |
Cla07g01523 | Cla-Chr7:32406091 | Cla07g01524 | Cla-Chr7:32430415 | 2.71E-54 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61485 | PF01486 | K-box | 4.80E-28 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g01524 | K09264 | - | csv:101218674 | 417.157 |