Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01524 ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAGATCAGTCGCCAAGTCACTTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGAGGCTGATGTTGCTTTGATTGTCTTCTCCACTAAAGGCAAACTCTTTGAGTACTCTTCTGATTCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTGTTATGCAGAGAAACCATTGGCCCCAAATGGAGATCCTGAATTACAGAACACTGATCTTGCTAGTACAGTTTATTGGCTGTATTGTCTTGTCCTTTTATTGGTAAGTTGGTGTCAGGAGTATCCAAAACTTGCAGCCAGATTGGAAATTATACAGAAGAACTTAAGGCATTATTTGGGAGAAGAACTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATACATCACTCAAGCGCATAAGATCAAGAAAGAACCAACTAATGCAAGAATCCATTTCAACACTACACAAAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTTGCAAATAAGGTGAAAGAGAATGAGAAGGGTTTGGTTGAACGTGGACAATGCGATGACCTCCCAAACTTGGTTCGTAATCAGCCCATTTTTGCAATGCCGTCACCAATTATTCCTTCTTTATCTATTGGAGTAAACTTGCATGGGAGAGGATCAGATGAAGATGAAACAAGGGCAACAAGCGTCAACAACATCCAAATACCAGCGTGGATGCTTAGCCATGTGACTGAAAATCCTCATAACTAA 804 40.8 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYCYAEKPLAPNGDPELQNTDLASTVYWLYCLVLLLVSWCQEYPKLAARLEIIQKNLRHYLGEELDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISTLHKKERELQEENRQLANKVKENEKGLVERGQCDDLPNLVRNQPIFAMPSPIIPSLSIGVNLHGRGSDEDETRATSVNNIQIPAWMLSHVTENPHN 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32430415 32436531 + ClCG07G016030.2 Cla07g01524 277512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01524 267 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla07g01524 267 PANTHER BNAA09G02740D PROTEIN 1 89 - -
Cla07g01524 267 PANTHER BNAA09G02740D PROTEIN 108 233 - -
Cla07g01524 267 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Cla07g01524 267 Coils Coil 144 197 - -
Cla07g01524 267 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cla07g01524 267 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla07g01524 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla07g01524 267 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla07g01524 267 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Cla07g01524 267 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla07g01524 267 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla07g01524 267 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla07g01524 267 Pfam K-box region 109 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla07g01524 267 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla07g01524 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 89 - -
Cla07g01524 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 108 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02508 Cla-Chr1:38740495 Cla07g01524 Cla-Chr7:32430415 2.05E-37 dispersed
Cla04g01139 Cla-Chr4:26574685 Cla07g01524 Cla-Chr7:32430415 8.64E-88 dispersed
Cla07g01524 Cla-Chr7:32430415 Cla08g01054 Cla-Chr8:23240146 2.55E-58 dispersed
Cla07g01523 Cla-Chr7:32406091 Cla07g01524 Cla-Chr7:32430415 2.71E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61485 PF01486 K-box 4.80E-28 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01524 K09264 - csv:101218674 417.157