Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01574 ATGCAGAGCAGTACAATTCGATCAGAGCCACGTGGCTGCATATGGTCCATTGCTTTAGCTTTCCAATGGAGGATGGTCGCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCGTTGGCGGCGGCCACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTTGGCCTTCACTATCAATCTATGCTACCACCAACTGTGCACCACCCGCATAGATCAGAGTTCAAAATCAACTGCATCGACAAGGCCGAGGTCAAGGACGAGACCGAATTGGAAAAGCAACAGAAATCAAATAATAATTCTAATAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCGACATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACATCTCAACAACCTCAGGATAATAATAATCTTCATAACTTCAATCATCTCAATTTGTCTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTTTCTCAAGACAAGAATAACAATAATAATGCAGATAATCCTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 1011 44.11 MQSSTIRSEPRGCIWSIALAFQWRMVAADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCIDKAEVKDETELEKQQKSNNNSNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSSTTTTNNLPFLTSQQPQDNNNLHNFNHLNLSLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNPPNKDHGFASDE 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32953906 32956180 - ClCG07G016500.2 Cla07g01574 277562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01574 336 MobiDBLite consensus disorder prediction 228 253 - -
Cla07g01574 336 Pfam TCP family transcription factor 85 200 IPR017887 -
Cla07g01574 336 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 52 318 IPR005333 GO:0003700
Cla07g01574 336 MobiDBLite consensus disorder prediction 39 59 - -
Cla07g01574 336 MobiDBLite consensus disorder prediction 193 210 - -
Cla07g01574 336 MobiDBLite consensus disorder prediction 314 336 - -
Cla07g01574 336 MobiDBLite consensus disorder prediction 185 210 - -
Cla07g01574 336 PANTHER OS05G0513100 PROTEIN 52 318 - -
Cla07g01574 336 ProSiteProfiles TCP domain profile. 85 143 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01574 - - - csv:101216548 397.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02418 Cla-Chr1:37811267 Cla07g01574 Cla-Chr7:32953906 4.16E-29 dispersed
Cla03g00623 Cla-Chr3:7465861 Cla07g01574 Cla-Chr7:32953906 7.13E-29 dispersed
Cla04g01148 Cla-Chr4:26703281 Cla07g01574 Cla-Chr7:32953906 1.64E-36 dispersed
Cla07g01574 Cla-Chr7:32953906 Cla11g01722 Cla-Chr11:30838988 2.20E-23 dispersed
Cla07g01574 Cla-Chr7:32953906 Cla06g01535 Cla-Chr6:28931802 4.71E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00808 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.4e-68 255.0
Cla02g01393 . 37 247 TCP Transcription Factor Family AT5G23280 59.9 5.9e-57 218.0
Cla06g00015 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Cla05g02451 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.9e-41 165.2
Cla04g01209 CCT,ECH 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.7e-39 161.0
Cla11g01311 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cla11g01311 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.5e-36 150.6
Cla05g01434 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.2e-60 229.2
Cla01g00808 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 9.0e-63 237.3
Cla02g01393 . 9 247 TCP Transcription Factor Family AT5G08330 55.8 8.4e-61 230.7
Cla11g01311 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.5e-42 170.6
Cla07g01574 . 68 193 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61489 PF03634 TCP 1.40E-27 No_clan Cla TF