Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01574 ATGCAGAGCAGTACAATTCGATCAGAGCCACGTGGCTGCATATGGTCCATTGCTTTAGCTTTCCAATGGAGGATGGTCGCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCGTTGGCGGCGGCCACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTTGGCCTTCACTATCAATCTATGCTACCACCAACTGTGCACCACCCGCATAGATCAGAGTTCAAAATCAACTGCATCGACAAGGCCGAGGTCAAGGACGAGACCGAATTGGAAAAGCAACAGAAATCAAATAATAATTCTAATAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCGACATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACATCTCAACAACCTCAGGATAATAATAATCTTCATAACTTCAATCATCTCAATTTGTCTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTTTCTCAAGACAAGAATAACAATAATAATGCAGATAATCCTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 1011 44.11 MQSSTIRSEPRGCIWSIALAFQWRMVAADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCIDKAEVKDETELEKQQKSNNNSNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSSTTTTNNLPFLTSQQPQDNNNLHNFNHLNLSLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNPPNKDHGFASDE 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32953906 32956180 - ClCG07G016500.2 Cla07g01574 277562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01574 336 MobiDBLite consensus disorder prediction 228 253 - -
Cla07g01574 336 Pfam TCP family transcription factor 85 200 IPR017887 -
Cla07g01574 336 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 52 318 IPR005333 GO:0003700
Cla07g01574 336 MobiDBLite consensus disorder prediction 39 59 - -
Cla07g01574 336 MobiDBLite consensus disorder prediction 193 210 - -
Cla07g01574 336 MobiDBLite consensus disorder prediction 314 336 - -
Cla07g01574 336 MobiDBLite consensus disorder prediction 185 210 - -
Cla07g01574 336 PANTHER OS05G0513100 PROTEIN 52 318 - -
Cla07g01574 336 ProSiteProfiles TCP domain profile. 85 143 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02418 Cla-Chr1:37811267 Cla07g01574 Cla-Chr7:32953906 4.16E-29 dispersed
Cla03g00623 Cla-Chr3:7465861 Cla07g01574 Cla-Chr7:32953906 7.13E-29 dispersed
Cla04g01148 Cla-Chr4:26703281 Cla07g01574 Cla-Chr7:32953906 1.64E-36 dispersed
Cla07g01574 Cla-Chr7:32953906 Cla11g01722 Cla-Chr11:30838988 2.20E-23 dispersed
Cla07g01574 Cla-Chr7:32953906 Cla06g01535 Cla-Chr6:28931802 4.71E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61489 PF03634 TCP 1.40E-27 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01574 - - csv:101216548 397.127