Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01582 ATGCATCCCATGCAGGATGTGGGCACACGTAGGCCTTTAAAAGGGGGCCGACCTGGTCCAAAGCCAATTCAGCATGCTCGACCGAGCTTCAAACAAAGTCCAGAACCTTCTTCTTCTGATCTGTCAGATCGGGCTTTTGGTTTCAACCACACTTATCGTAGTCGATTCAATCAGATCTACTTCACCCTTCTTACTGCTGATTTTTGTGCTACAATTTCTGGTGGGATGTTGTTTCCAAGTGGTGCAACTGCAATGTGGCTAGGTTGGGTTGGGAAAAGAGAGGTCAATAAGACCGTGCTCAAAATCCCTAAAATTGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGTCCTCATGGATCCCTTCTTGCAGATATAGCACAGGCAACTAGAAATTATCATGAATATCAAATGATCATGGGAATACTCTGGAAGCGGATTAATGATACCGGAAAGAATTGGAGGCATGTCTACAAGGGTTTGACCGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGTGTCATAGATGACATCAGAGAACATGCATATCAGATATCAACCTTATCTGATTTTCAATACATCGACTCCAATGGGAGGGACCAAGGTAACAATGTTAGAAAGAAATCTCAAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCATTGAGGTCAGACAGAAGGCTGCTGCTAACAGGGACAAGTTTCGCAGCCCATCATCTATGGGCAGTATGTATAGACCAAGTTCAGGAGGATATGATGACCGCTATGAAGGACGATATGGAAGCCGTGATGGAGACAGAAATGTTGATTCTTATGGGAGGGAAAGAGATTATGGTTTTAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATGGTCGTGATTATGAAGAACGCTATAACAGAGATGGTTTTAAGGATGATGATTATCGAGGAAGAAGCCGAAGCATTGATGACTATCAGTATGGTTCAAGGAGCAGGAGCTCTGACAGAGATGGAGAACGTACATTTGATGATGATGGTCAAGCTTCTTCTCGCAACAATGGTGCCAGAGCTGACGAGCAAGCTCAGGATGGAAGGCAGCTTGAACGTAAATTTTCAGAACAGAATATTGGTGCTCTGCCAAGTTATGAAGAAGCTGTGAATGAATCTGGAAGCACTGGGCATAGTCAAAGAGATGTAGAAGCTCCAGCAACTACTGCTCCAAGAACTTTTCCTCCGCCCACGCCCAGTACTCCAAGCCAGCTAACTACTCATGCAACCACCGCATCCCCGCCTACCCAGGGACATGATGGTTCTGATGAATTTGACCCCCGTGGTTCAGTTCCAGTTCCAGCTGCTCCAAATGCCTCGAGTAGTTTGGAGACAAATTTATTTGACTCCTTGGCCTTAGTGCCTGTTGGGCCAGTAACATCCAGTGCAGACTCTGAGTGTCATGTTCAGACAAACTCTGCTGTGGGATCCTATACTCAAACTCAGACTTTTGAAGACCCATTTGGTGACTCCCCTTTTAAAGCCATTTCTTCCTCTGGAGTCCAAGATCAAGCACATTTTCACCGTGGGGAATCATTTTCTGCAGCAACTTACTCCACACCAGACATCCCTGTTCAACCTCAACCGAATTTGCATCACCCTCGTGAAGAAACTCTGCAACATCACAATATTGGTGTACTGGCTGATCTCCTTCCTCCTGAAACTTTACCAGCTGCTGTTTCACAGCCCACATTTACAATATCAAACCAACCAGCACAGCCAAATTTTCAAGCTGCATCTGGCCTGCCTGCACAACCAAATTCTAACTTGGGGAATTATCAGCAAGAGGGAAATACTGGTCCTGTGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTCGGCAACGGGATGTCCGTGGCACAGGGAGGAGTACCAGCTCATGTCAATTCATATATGGCTCCTCCAAGTGCTGGACCTAATACCCAGCCCAACAATTTTGGAACAACTCATAATGGTTCTGCAGCTCCCACGAGTTCTCATGTCACACTTCAAACTACAAGACCGCCTGCTCAGCTTGCTAGTGGAAACTTCAATCCGCCACACGGTTCAGTAGCTTCTCAAGTATCTTACCAAGCCTCAAATTTTCCTGTTGTAAAATCCAACGTTGAGGTTATGGGTAGTTTTAATCCTCAGGCAGGAAACTACACAATGACTTCCCAGCAAATTCCTCCAGCCGGATCACTTTCAACTGCATCTCAAGCTTCAAAGAATAAGTTTGAAACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGGCTAGTCAATTTAAACATATCTGGACCTAAAGCAAACCCAATGGCGGACATCGGTGTTGATTTTGAAGCCCTCAATAGGAAGGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGTGATATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGCTAGTGCACTAAGGCCACCTCCAAATGCAATGTCAGGTTCCGGTTCCGGTTCGGGCATGGGAATGGGCATGGGCATGGGCATGAACCCCAATCTTGGCATGGGCATGGGCATGAGAGGCTATGGAGGTATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGCATGGGGCAACAAGGAATCCCAATGCAGCAACCTCGAGCGAACATGCCCGGTGTATACAACCCGATGATGGGTGCTGGTGGTTATGCTCCTCAACAGCCACCATACGGCAGTTACCGATGA 2772 46.43 MHPMQDVGTRRPLKGGRPGPKPIQHARPSFKQSPEPSSSDLSDRAFGFNHTYRSRFNQIYFTLLTADFCATISGGMLFPSGATAMWLGWVGKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGILWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSDFQYIDSNGRDQGNNVRKKSQNLVALVNDKERIIEVRQKAAANRDKFRSPSSMGSMYRPSSGGYDDRYEGRYGSRDGDRNVDSYGRERDYGFRDDRSGRNEDSYGRDYEERYNRDGFKDDDYRGRSRSIDDYQYGSRSRSSDRDGERTFDDDGQASSRNNGARADEQAQDGRQLERKFSEQNIGALPSYEEAVNESGSTGHSQRDVEAPATTAPRTFPPPTPSTPSQLTTHATTASPPTQGHDGSDEFDPRGSVPVPAAPNASSSLETNLFDSLALVPVGPVTSSADSECHVQTNSAVGSYTQTQTFEDPFGDSPFKAISSSGVQDQAHFHRGESFSAATYSTPDIPVQPQPNLHHPREETLQHHNIGVLADLLPPETLPAAVSQPTFTISNQPAQPNFQAASGLPAQPNSNLGNYQQEGNTGPVNFQNQTEPGREFGNGMSVAQGGVPAHVNSYMAPPSAGPNTQPNNFGTTHNGSAAPTSSHVTLQTTRPPAQLASGNFNPPHGSVASQVSYQASNFPVVKSNVEVMGSFNPQAGNYTMTSQQIPPAGSLSTASQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPMADIGVDFEALNRKEKRMEKPSTAPVISTINMGKAMGSGSGIGRAGASALRPPPNAMSGSGSGSGMGMGMGMGMNPNLGMGMGMRGYGGMNQPMGGMGMNMGMGQQGIPMQQPRANMPGVYNPMMGAGGYAPQQPPYGSYR 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33030625 33042350 - ClCG07G016600.2 Cla07g01582 277570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01582 923 MobiDBLite consensus disorder prediction 581 628 - -
Cla07g01582 923 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 92 904 - -
Cla07g01582 923 MobiDBLite consensus disorder prediction 256 345 - -
Cla07g01582 923 MobiDBLite consensus disorder prediction 1 42 - -
Cla07g01582 923 MobiDBLite consensus disorder prediction 231 366 - -
Cla07g01582 923 ProSiteProfiles ENTH domain profile. 97 229 IPR013809 -
Cla07g01582 923 CDD ENTH 105 221 - -
Cla07g01582 923 PANTHER EPSIN/ENT-RELATED 92 904 - -
Cla07g01582 923 MobiDBLite consensus disorder prediction 581 676 - -
Cla07g01582 923 MobiDBLite consensus disorder prediction 418 433 - -
Cla07g01582 923 Gene3D - 102 241 IPR008942 -
Cla07g01582 923 MobiDBLite consensus disorder prediction 383 455 - -
Cla07g01582 923 SUPERFAMILY ENTH/VHS domain 102 241 IPR008942 -
Cla07g01582 923 SMART enth_2 103 229 IPR013809 -
Cla07g01582 923 Pfam ENTH domain 104 225 IPR013809 -
Cla07g01582 923 MobiDBLite consensus disorder prediction 384 398 - -
Cla07g01582 923 MobiDBLite consensus disorder prediction 650 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01582 K12471 EPN; epsin - csv:101208671 1346.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01582 Cla-Chr7:33030625 Cla08g00425 Cla-Chr8:12944556 3.91E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53