Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g01594 | ATGTACCAATCAACTTCTTCCTCTTCTTCCACTCAGAAATCCATGGCCTCCGCCCACGGCGGCGCCGGTCTCACTCGGTACGGTTCCGCGCCTGGATCTCTCCTGACCACGGCGGTCGATTCCGTGATTGGAAGTCGGCAACCGGACTCCGCCGCCACGCTCCGGGGGCCGCCGTCGTTCGGCGGCCACTACTTCTCCTCCGCCGATTCCTCCGTCGTGGAGTCGTCAAGGAAGGTAGTTCAGTCGTCGTCTACTTCCAACGATCTGAAATCATCGTCGTCCACCGCCGCCGCCTTGCATAGGTCATACGGAATCAACGATTTGGCGTTAGGGGATTTCTCGACGGGTAGAAATTTCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTTGCCGAACCAAACGGAGGGTTTTCATTGACAATAGGAGGTGGTGGAAATGGAGTAGGAAGACTAAAGTCTCAAATGAGCTTCAGTGGGCAGGATAATTCACTTTCCCAAATCTCTGAAATGAGTGAAAGTTTTGTGGAGGCAGCCAATTCCTCAAGCAATGGCCTTCAAAGCAACACCAATTCCACACATTCTTTTGGCCCCTCTGCCTTTGCTATGGACTCTTCATGGGACACCTCCAATAATTCCATTGTCTTTGGTGGCCCTCATGCTAAAAGATCCAAGCACCATTCCGATGCCGACTTCTTCACTGGCCTCGAGTCTCAATTTAGCCTGCCACAAACAACTCTAGAAATGGCAGCTGTGGAGAGGTTGCTTCAAATTCCTGAAGATGCTGTTCCTTGTAAGATTCGAGCCAAGCGTGGCTGTGCTACTCACCCTCGGAGTATTGCCGAACGGGAGAGAAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATTCAGACATGTTGGACTTGGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTTATAA | 1089 | 50.23 | MYQSTSSSSSTQKSMASAHGGAGLTRYGSAPGSLLTTAVDSVIGSRQPDSAATLRGPPSFGGHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSTAAALHRSYGINDLALGDFSTGRNFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEPNGGFSLTIGGGGNGVGRLKSQMSFSGQDNSLSQISEMSESFVEAANSSSNGLQSNTNSTHSFGPSAFAMDSSWDTSNNSIVFGGPHAKRSKHHSDADFFTGLESQFSLPQTTLEMAAVERLLQIPEDAVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECL | 362 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 33244503 | 33251624 | - | ClCG07G016730.2 | Cla07g01594 | 277582 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g01594 | 362 | Coils | Coil | 330 | 357 | - | - | |
| Cla07g01594 | 362 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Cla07g01594 | 362 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 23 | 355 | - | - | |
| Cla07g01594 | 362 | CDD | bHLH_AtbHLH_like | 295 | 347 | IPR045239 | - | |
| Cla07g01594 | 362 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 290 | 340 | IPR011598 | GO:0046983 | |
| Cla07g01594 | 362 | Pfam | Helix-loop-helix DNA-binding domain | 295 | 341 | IPR011598 | GO:0046983 | |
| Cla07g01594 | 362 | PANTHER | TRANSCRIPTION FACTOR BHLH129 | 23 | 355 | - | - | |
| Cla07g01594 | 362 | SMART | finulus | 296 | 346 | IPR011598 | GO:0046983 | |
| Cla07g01594 | 362 | Gene3D | - | 291 | 359 | IPR036638 | GO:0046983 | |
| Cla07g01594 | 362 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cla07g01594 | 362 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 293 | 354 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g01594 | Cla-Chr7:33244503 | Cla09g00400 | Cla-Chr9:3853028 | 8.57E-46 | dispersed | |
| Cla07g01594 | Cla-Chr7:33244503 | Cla06g01221 | Cla-Chr6:25394004 | 9.07E-14 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61491 | PF00010 | HLH | 9.70E-09 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g01594 | - | - | bhj:120087044 | 603.208 |