Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01603 ATGGCTGATTCCCGAGCTCTTCCTCTTCGTTGCGGAGCAGGTATCGTCAAAAGTATCCGCTTAGAGAACTTCATGTGTCACAGCAACTTGTATATTGAATTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGCGCTATACTGACTGCTTTATGTGTGGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCAATGTTGTATTGCAAAATACTGGGGAGGATGCTTTCAAGCATGGAATATATGGTGATGTTATAATCATAGAAAGAAGGATATCCGAAGCCACCAGTGCTATTGTTTTGAAGGATTCTCATGGGAAAAAAGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATTTACTGAAAAACATTTTTGATCAATTGAGATCTGCAAATGCGCTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAAGTCCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATCGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAAAAGACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGGAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGCCGTAAAATAAACTACATCCAAAAGATGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACACAGGCCGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGACTGAAGATGCTAAGTCAACAGTCATGAGGTTGAAAGAGGAGGAAAATGCCTTAATGGAAAGTCTATACAGTGGGAGAAATGAAATAAAAAAGATTGCTGAAGAGATTGAAAGTTATGAGAAAAAGCATTATGAATTTTCTCACTCAATTCGAGAGCTAAGGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGAAGGTTGCTCAATGCTTTCATTGTGACGGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCGGTGTTAAATATTCCAGATCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAACCACACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTCGCATTTGACCAACGTATATCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATATATGCATTATCTTCCAGTTCCAAAAAGGAGGAGAATCTCTTTTACCAGCTGAATCCCATTTTGCCTAAAAATCTCTTCAGGTTTTCTCGAGGTTCCGTCCAGACAATTCTTCCCCCAGTTAGAAGACCCAGAAGTGGCAGACTTTGTAGTTCCTTTGAAGACCAAATTAAAAGTCTTGAAAGAGATGCATTTAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAGCAATGCAAAGAGGAAGTGTCGGAGTGCAGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAGACTAGTTCATTGCCTTCATCAAATGTGGACGAGCTTCATCAAGAAATTTCTAAAATCGAAGAGGAGATACAAGAGAATAATTTGCTTTTGGAAAAGTTTAAAATTAGGATGAAAGAAGCGGAAGCCAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTCTGTGAGTCAGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGAGCTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTACTTTTTGATATTAAAGAGGCAGAGAGACAATATCAGGAGCTTGAGCGCCATCGTAAGGAGAGCTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTGGGTGATTGGGATGGGAGCACACCTGAACAACTGAGTGCACAATTAACAAGGCTAAATCAGAGACTGAATAATGAGACTCGACGATGTTCTGAATCTTTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATCATAAGAAAACAACAGACTTATAAAAGTTTTAGGGAGAAGTTGGATGCTTGCCAGAAAGCTCTTGAGCTACGGTGGAATAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAGGGGATCAGCGGACATATAAAAGTTAATTACGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCAACTCTATGCTTTGCATTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTCGATGTGTTTATGGTGAGCTACTGTCTCATTCTTGATGCAGTAAGCCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACACCTCATGACATCGGTATTGAGACACTTTACGTTTGGGGTTCTAACTACAGCATAGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3297 40.4 MADSRALPLRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVINVVLQNTGEDAFKHGIYGDVIIIERRISEATSAIVLKDSHGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERFIEKKTQIASMMERTSEVRRMKDELQGTLSLATREKLGLEEEHGRKINYIQKMAKRVRLLEQQVQDIHEQHIRNTQAEESEIEEKLKELESETEDAKSTVMRLKEEENALMESLYSGRNEIKKIAEEIESYEKKHYEFSHSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDMWAPAVESAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIIIYDFSRPVLNIPDHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKIYALSSSSKKEENLFYQLNPILPKNLFRFSRGSVQTILPPVRRPRSGRLCSSFEDQIKSLERDAFNVKQEAEQCRKRKRVSEEQLRDLEDNLSNAKRKCRSAERFLMSKNLELQDLRKSQVAETSSLPSSNVDELHQEISKIEEEIQENNLLLEKFKIRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEAERDMLQIERELHSAEKEKDHYEGIMTNKVLFDIKEAERQYQELERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLDACQKALELRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMVSYCLILDAVSRKISLDTLVDFALAQGSQWIFITPHDIGIETLYVWGSNYSIVKQGERIKKQQMAAPRS 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33341372 33354410 - ClCG07G016820.2 Cla07g01603 277591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01603 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 294 IPR027417 -
Cla07g01603 1098 Coils Coil 189 223 - -
Cla07g01603 1098 Gene3D - 16 267 IPR027417 -
Cla07g01603 1098 SUPERFAMILY Smc hinge domain 423 604 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cla07g01603 1098 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 9 607 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cla07g01603 1098 Coils Coil 737 820 - -
Cla07g01603 1098 Coils Coil 822 849 - -
Cla07g01603 1098 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 634 1098 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cla07g01603 1098 Pfam RecF/RecN/SMC N terminal domain 16 1028 IPR003395 -
Cla07g01603 1098 Coils Coil 877 915 - -
Cla07g01603 1098 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 9 607 - -
Cla07g01603 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 1063 IPR027417 -
Cla07g01603 1098 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 634 1098 - -
Cla07g01603 1098 Coils Coil 362 396 - -
Cla07g01603 1098 Coils Coil 340 360 - -
Cla07g01603 1098 CDD ABC_SMC6_euk 16 168 - -
Cla07g01603 1098 Gene3D - 766 1085 IPR027417 -
Cla07g01603 1098 Coils Coil 284 304 - -
Cla07g01603 1098 CDD ABC_SMC6_euk 983 1098 - -
Cla07g01603 1098 Coils Coil 655 710 - -
Cla07g01603 1098 Coils Coil 312 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01603 Cla-Chr7:33341372 Cla09g00408 Cla-Chr9:3894946 1.62E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01603 K22804 - csv:101208493 1909.81