Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01625 ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGCCACGAATTCTCCGCCATGTCTCTGCCGGAATTCACTAACAGCCAGTCAACGGAACAAATCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACTCGTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTCGCCTGCCCGGCTTTCCGGTCGGGCAGCTGCCCCAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTTCACCCGGCCCGTTACCGGACCCGGGCTTGTAATGCTGGCCGGTTTTGCCAACGGAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGGCCAGATACCAAACAGAAATTTAATCTTAATGCTCACCGGCTGCGTGTGGCGGTCTCCACCGTTGAATGTCTGCCGGAGGAAAAAATTGACGGCGTTTCGGAAATTCCGGTGAGGGAGAACGGCGGCGGACGGGGAAATCGGAGTTTTGGGTTGGAGTACTGGCTTCACCCGGCCCGTTACCGGACCCGGGCTTGTAATGCTGGCCGGTTTTGCCAACGGAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGGCCAGATACCAAACAGAAATTTAATCTTAATGCTCACCGGCTGCGTGTGGCGGTCTCCACCGTTGAATGTCTGCCGGAGGAAAAAATTGACGGCGTTTCGGAAATTCCGGTGAGGGAGAACGGCGGCGGACGGGGAAATCGGAGTTTTGGGTTGGAGGTGTCGGAGTTGGACTCGCCGCATATTGACTGGATATCGGAATTGTTGCAGTAA 906 55.41 MFQGFVFGINDVYGHEFSAMSLPEFTNSQSTEQIDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPDTKQKFNLNAHRLRVAVSTVECLPEEKIDGVSEIPVRENGGGRGNRSFGLEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPDTKQKFNLNAHRLRVAVSTVECLPEEKIDGVSEIPVRENGGGRGNRSFGLEVSELDSPHIDWISELLQ 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33584932 33586034 - ClCG07G017030.1 Cla07g01625 277613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01625 301 Gene3D - 85 148 - -
Cla07g01625 301 PANTHER UNKEMPT FAMILY MEMBER 197 246 IPR045234 -
Cla07g01625 301 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Cla07g01625 301 SMART c3hfinal6 205 228 IPR000571 GO:0046872
Cla07g01625 301 SMART c3hfinal6 119 142 IPR000571 GO:0046872
Cla07g01625 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 109 IPR000571 GO:0046872
Cla07g01625 301 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 197 246 - -
Cla07g01625 301 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872
Cla07g01625 301 PANTHER UNKEMPT FAMILY MEMBER 25 160 IPR045234 -
Cla07g01625 301 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Cla07g01625 301 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 25 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01625 Cla-Chr7:33584932 Cla10g01629 Cla-Chr10:31945774 2.36E-10 dispersed
Cla07g01625 Cla-Chr7:33584932 Cla05g01812 Cla-Chr5:30072712 4.94E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61495 PF00642 zf-CCCH 1.90E-05 CL0537 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01625 - - mcha:111011570 281.952