Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01653 ATGATGTTAGTTAGGATGGGAGAACTCTATCTTACAATTCTAATACTGGCTTGCCTTCATTATCTTGCACTGTCTGATTTTCAAGGTGATGCACTCTTTGCATTGAAGAATACATTGAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGTCCAATGTTATATGTAGTGGAAGCAATGTGATCTCTGTATCCTTGTCCACAATGGGATTTACTGGAACCTTGTCTCCACGAATTGGACTTCTAAAATCACTTTCAACCCTGATTTTGCAGGGAAATTACATAACTGGAGAGATACCTAAGGATTTTGGAAACCTGACAAATTTGGTTAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCGTCCCTTGGTAACCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCGTCTAACGGGGACTATTCCGGAGTCACTTTCAACCCTTCCTAGCTTGATCAATCTTCTGCTTGATTCAAATGATCTCAGTGGTCCAATTCCGCAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGCAAACAAGTTAAATTGTGGCTGGAAGTCTCTTCATGCCTGTGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAACCCAAGGTTGGCCTTATAGTTGGAATAATTGCTGGGTTTACCGTTGCTCTTCTTTTGGTGGGAGTATTATTTTTCTTGTCCAAGGGTAGATATAAAAGCTACAAGCGCGAAGTGTTTGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCCACAGACAACTTTAGCGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGCTTGCAGATGGCACCAAAGTTGCTGTGAAACGGTTGACTGATTATGAAAGTCCGGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTGTTGCGTCTCATTGGGTTCTGTACAACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAACTTGAGTGTTGCCTACCGTCTTCGAGAACTTGTAACGGGGCAACGTGCAATCGACTTCTCACGCTTAGAAGAAGAAGACGATGTTTTACTGCTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTTGATGCCATTGTTGATCGAAATCTAAAAAACTACAACATTCAAGAGGTGGAGATGATGATTCAAGTCGCATTGCTGTGTACACAGCCATGCTCGGATGACCGCCCAGCAATGTCACAAGTCGTTCGGATGCTCGAGGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTGACTCGCAGACAAGAATATGAGAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCAATACATAGACAGGATGCAATCCAGTTGTCTGGTTTAAGAATCTTGAGGATAATTTCTTCCTCTGTCTTCTGCCCCAAATCTCCAGGTGAAGCACTCATTGCATTCAAGAACGCATTGAATGCAACAAATAGTCAGCTCAAAGATTGGAACCCAAATCATGTCAATCCATGCAGTAGTTGGTCCAATATTATGTGTAATGGGAACAATGTGACAGCTATAACCTTGCCAACAATGGGATTTACTGGAACCTTGTCTCCAACAATTGTTGCGATAAAATCTCTTTCAACCCTGAACTTGAAGGGAAATTACATAACTGGAGGGATACCAGATGAATTTGGAAACCTGACAAATTTGGTCACTTTGGATCTAGAAAATAACAGCCTAATTGGTCAAATACCATCGTCCCTGGGTAATCTTAAGAAACTACGGTTCCTCAGAACTCTGAGTCAAAATCATCTAACTGGGACTATTCCTGAGACATTTTCAACCCTTCCTAGCTTGATCAATCTTTCGCTTGATTCAAATAATCTCAGTGGCCAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAACTTTTCTGGAAATAAATTGGATTGTGGCAAAAATTCACGTCGATCCTGTGATTCGGACAGTACAAACTCAGGTGCTTCAAATAAGTCGAAGGTCGGCCTCATAGCTGGACTTATTGCTGGGTTAATAGTTGCTCTTCTTTTGGTCGGATTATTATTTTTATTGTGTAAGCGTAGATATAAAGGCTACAAGGGTGAAGTCTTCGAAGATGTTCCCGGTGAAATTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCTACAGAAAATTTTAGTGAGGAAAATGTTATAGGACAAGGAGGCTTTGGAAGGGTTTACAAAGGGGTGCTTGCTGATGGCACCAAGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCCTTGGGGGAGATGCTGCTTTTCTGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTATTGCGGCTGATTGGGTTCTGTACAACTCAGACTGAACGCTTATTGGTATATCCCTATATGCAGAACTTGAGTGTTGCCTACCATCTTCGAGGGCAACGTGCGATTGACTTCTCACGCTTTGAAGGAGATGATGATGTTTTACTGCTAGACCATGTCAAGAAATTGGAAAGGGAGAAGCGACTCAATATTATTGTGGATGGAAACCTGAATAACTATGATATCAGAGAGGTGGAGACAATGGCCCAAGTTGCGCTCCTATGCACACAGCCATCTTCGGAAAGCCGACCAACAATGTCACAGGTCGTTCGGATGTTAGAAGGCGAGGGGCTTGCAGGGAGGTGGGAGGAATGGCAGCAGTTAGAGGTGAGTCGCAGACAAGATTACGAGAGAATGCAAAGAAGATTTGAATTGGGGAATGATTCTATTTATAGACAGGAAGCTATCCAGTTGTCTGGTGGAAGATGA 2976 42.17 MMLVRMGELYLTILILACLHYLALSDFQGDALFALKNTLNATANQLTDWNPNQVNPCTWSNVICSGSNVISVSLSTMGFTGTLSPRIGLLKSLSTLILQGNYITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNRLTGTIPESLSTLPSLINLLLDSNDLSGPIPQQLFQVPKFNFSANKLNCGWKSLHACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLSKGRYKSYKREVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIQLSGLRILRIISSSVFCPKSPGEALIAFKNALNATNSQLKDWNPNHVNPCSSWSNIMCNGNNVTAITLPTMGFTGTLSPTIVAIKSLSTLNLKGNYITGGIPDEFGNLTNLVTLDLENNSLIGQIPSSLGNLKKLRFLRTLSQNHLTGTIPETFSTLPSLINLSLDSNNLSGQIPEQLFQVSKFNFSGNKLDCGKNSRRSCDSDSTNSGASNKSKVGLIAGLIAGLIVALLLVGLLFLLCKRRYKGYKGEVFEDVPGEIDRRIAFGQLKRFAWRELQLATENFSEENVIGQGGFGRVYKGVLADGTKVAVKQSTNYESLGGDAAFLREVEMISVAVHRNLLRLIGFCTTQTERLLVYPYMQNLSVAYHLRGQRAIDFSRFEGDDDVLLLDHVKKLEREKRLNIIVDGNLNNYDIREVETMAQVALLCTQPSSESRPTMSQVVRMLEGEGLAGRWEEWQQLEVSRRQDYERMQRRFELGNDSIYRQEAIQLSGGR 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33796996 33820866 + ClCG07G017340.1 Cla07g01653 277641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01653 991 Pfam Leucine rich repeat 583 635 IPR001611 GO:0005515
Cla07g01653 991 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Cla07g01653 991 Gene3D Ribonuclease Inhibitor 516 700 IPR032675 -
Cla07g01653 991 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 377 - -
Cla07g01653 991 Pfam Leucine rich repeat N-terminal domain 519 556 IPR013210 -
Cla07g01653 991 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Cla07g01653 991 SMART LRR_typ_2 654 678 IPR003591 -
Cla07g01653 991 SMART LRR_typ_2 162 186 IPR003591 -
Cla07g01653 991 SMART LRR_typ_2 90 113 IPR003591 -
Cla07g01653 991 SMART LRR_typ_2 605 629 IPR003591 -
Cla07g01653 991 SMART LRR_typ_2 114 138 IPR003591 -
Cla07g01653 991 Pfam Protein kinase domain 781 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01653 991 Gene3D Ribonuclease Inhibitor 26 207 IPR032675 -
Cla07g01653 991 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 867 991 - -
Cla07g01653 991 ProSiteProfiles Protein kinase domain profile. 288 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01653 991 PANTHER LRR RECEPTOR-LIKE KINASE 867 991 - -
Cla07g01653 991 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524
Cla07g01653 991 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Cla07g01653 991 Gene3D Phosphorylase Kinase; domain 1 749 856 - -
Cla07g01653 991 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 375 503 - -
Cla07g01653 991 PANTHER LRR RECEPTOR-LIKE KINASE 516 867 - -
Cla07g01653 991 Gene3D Transferase(Phosphotransferase) domain 1 369 474 - -
Cla07g01653 991 Gene3D Transferase(Phosphotransferase) domain 1 862 962 - -
Cla07g01653 991 Pfam Protein tyrosine and serine/threonine kinase 291 400 IPR001245 GO:0004672|GO:0006468
Cla07g01653 991 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 516 867 - -
Cla07g01653 991 SUPERFAMILY Protein kinase-like (PK-like) 761 943 IPR011009 -
Cla07g01653 991 PANTHER LRR RECEPTOR-LIKE KINASE 9 377 - -
Cla07g01653 991 SUPERFAMILY L domain-like 28 197 - -
Cla07g01653 991 ProSiteProfiles Protein kinase domain profile. 780 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01653 991 SUPERFAMILY L domain-like 514 689 - -
Cla07g01653 991 PANTHER LRR RECEPTOR-LIKE KINASE 375 503 - -
Cla07g01653 991 SUPERFAMILY Protein kinase-like (PK-like) 269 378 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01653 Cla-Chr7:33796996 Cla02g00011 Cla-Chr2:154226 4.40E-33 dispersed
Cla07g01653 Cla-Chr7:33796996 Cla11g00478 Cla-Chr11:5471599 1.68E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80716 PF00069 Pkinase 1.90E-12 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01653 - - csv:116403405 698.738