Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00027 ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTGAAGGAATGA 723 54.22 MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVKE 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 821925 826087 + ClCG08G000260.1 Cla08g00027 277682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00027 240 Coils Coil 210 230 - -
Cla08g00027 240 MobiDBLite consensus disorder prediction 1 25 - -
Cla08g00027 240 SMART finulus 176 226 IPR011598 GO:0046983
Cla08g00027 240 MobiDBLite consensus disorder prediction 57 76 - -
Cla08g00027 240 Pfam Helix-loop-helix DNA-binding domain 175 221 IPR011598 GO:0046983
Cla08g00027 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 237 IPR036638 GO:0046983
Cla08g00027 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Cla08g00027 240 MobiDBLite consensus disorder prediction 116 141 - -
Cla08g00027 240 MobiDBLite consensus disorder prediction 1 17 - -
Cla08g00027 240 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 238 - -
Cla08g00027 240 CDD bHLH_AtbHLH_like 175 227 IPR045239 -
Cla08g00027 240 Gene3D - 171 240 IPR036638 GO:0046983
Cla08g00027 240 PANTHER TRANSCRIPTION FACTOR BHLH80 15 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00027 Cla-Chr8:821925 Cla10g01649 Cla-Chr10:32151425 5.78E-39 dispersed
Cla08g00027 Cla-Chr8:821925 Cla06g01221 Cla-Chr6:25394004 3.00E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61502 PF00010 HLH 2.90E-10 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00027 - - csv:101209773 372.474