Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g00027 | ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTGAAGGAATGA | 723 | 54.22 | MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVKE | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 821925 | 826087 | + | ClCG08G000260.1 | Cla08g00027 | 277682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g00027 | 240 | Coils | Coil | 210 | 230 | - | - | |
Cla08g00027 | 240 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cla08g00027 | 240 | SMART | finulus | 176 | 226 | IPR011598 | GO:0046983 | |
Cla08g00027 | 240 | MobiDBLite | consensus disorder prediction | 57 | 76 | - | - | |
Cla08g00027 | 240 | Pfam | Helix-loop-helix DNA-binding domain | 175 | 221 | IPR011598 | GO:0046983 | |
Cla08g00027 | 240 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 173 | 237 | IPR036638 | GO:0046983 | |
Cla08g00027 | 240 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 170 | 220 | IPR011598 | GO:0046983 | |
Cla08g00027 | 240 | MobiDBLite | consensus disorder prediction | 116 | 141 | - | - | |
Cla08g00027 | 240 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cla08g00027 | 240 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 15 | 238 | - | - | |
Cla08g00027 | 240 | CDD | bHLH_AtbHLH_like | 175 | 227 | IPR045239 | - | |
Cla08g00027 | 240 | Gene3D | - | 171 | 240 | IPR036638 | GO:0046983 | |
Cla08g00027 | 240 | PANTHER | TRANSCRIPTION FACTOR BHLH80 | 15 | 238 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g00027 | Cla-Chr8:821925 | Cla10g01649 | Cla-Chr10:32151425 | 5.78E-39 | dispersed | |
Cla08g00027 | Cla-Chr8:821925 | Cla06g01221 | Cla-Chr6:25394004 | 3.00E-18 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61502 | PF00010 | HLH | 2.90E-10 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g00027 | - | - | csv:101209773 | 372.474 |