Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00035 ATGCATGGCCACAGCCGCTTGAACACTTCGCGTTCCACTGTCTCGCAGTCGCCGCCGGCCTCGCCTCGGCATCGCCAACTAAGGAGTCGGAGTGGCAGTCATAGTGGTAGCGGTAACGGCGGTTTTAGTGTTCGTGACTCGAAGCAGAGCAGCATTATGGAGAAACTGGTTTTCCTTATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTATATTTCAATGATGTTATTGTATATGGGCTCCTTGAATTTCGATGTTTCCATTTCCAATCTGAAAACCAGGGTCGTTTCAGTTAACAAACGAGCTCCGCCGGGGTCTGTGTATAGAAGTCCTCAGGTTTTTGAAAAGCTATGGCCTTTCATGGAAGCTGAGAGCCGAAATAGTACCACACATGCGTTGTCAACTGCATGGAATTCGAGAGTGCACCATGTTTGGAAACCATGCATCAGTAGAAGCACTATGACAGAGTTACCAAAGTCCAATGGTTTTCTTATCATTGAAGCCAATGGTGGGTTAAATCAGCAAAGGTTGTCGATATGTGATGCAGTTGCAGTGGCTGGACTACTGAATGCTTCTCTTGTCATTCCAATATTTCATTTGAATAGTGTTTGGCGAGATTCAAGCAAATTTGGTGATATTTTCGATGAAGATTTTTTCATACAAGCATTAAGCAAGCATGTTAATATTGTGAGAGAGCTCCCAGCTGATGTACTGCAGCAGTATGATAATAATATAAGCAGTATTGTGAACTTAAGAGTAAAAGCATGGTCAAGCCCAATGTACTATTTGCGTAAAGTCCTTCCGAAGCTCTTGCAATTGAGGGCTGTAAGGATTGCCCCATTCTCCAACCGGTTGGCTCATGGAGTTCCTTCAGATGTTCAAGCACTTAGATGCTTAGCCAATTTTGAAGCTTTGAGGTTTGCAGAATCTATAAGAATACTGGCAGATCTCATGGTTGATCGGATGATCAAAAAAAGCTCTCAGAGTGGAGGAAAATATATTTCTGTGCATCTTCGCTTTGAGGAGGTACTCATCGTGGACATGGTTGCATTTTCGTGCTGTGAATATGATGGTGGAGAGGAAGAGAAGCATGAGATGGACCTGGCTAGAGAAAGGAGCTGGAGAGGAAAATTCAGAAGGAGGGGGAGGGTGATAAGGCCTGGTGCTAATAGGGTGGATGGAAAATGTCCTTTAACCCCACTGGAGGTCGGACTGATGCTTAGAGGAATGGGTTTTGATAATACAACTTCCATATATGTTGCAGCAGGAAAAATTTATAAAGCAGAGAAGTATATGGCTCCACTTAGGCAGATGTTTCCACGTTTAGAAACTAAAGATACTATAGCTACTAAGGAAGAACTTGCTCCATTCCAGGGCCACTCTTCTCGATTGGCTGCTCTTGATTACACAGTATGTCTTCATAGTGAAGTCTTTGTCACAACTCAAGGTGGGAATTTCCCCCACTTTTTGACGGGTCACAGGCGCTATATTTATGGCGGACATGCAAAGACAGTCAAACCAGATAAGAGGAAACTAGCATTAATTTTTGATGATCCTAATATACGATGGCAAAACTTCGCGCAACAAATGCAAGATATGCTTCGCCACAACGATCAAAAGGGAATGGAAATGAAAAAGCCCAGTGGATCGTTGTATACGTTTCCCATGCCAGATTGCATGTGCAAAGTACCAAACACGAAGAACCATGATTAA 1734 43.54 MHGHSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFMEAESRNSTTHALSTAWNSRVHHVWKPCISRSTMTELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNASLVIPIFHLNSVWRDSSKFGDIFDEDFFIQALSKHVNIVRELPADVLQQYDNNISSIVNLRVKAWSSPMYYLRKVLPKLLQLRAVRIAPFSNRLAHGVPSDVQALRCLANFEALRFAESIRILADLMVDRMIKKSSQSGGKYISVHLRFEEVLIVDMVAFSCCEYDGGEEEKHEMDLARERSWRGKFRRRGRVIRPGANRVDGKCPLTPLEVGLMLRGMGFDNTTSIYVAAGKIYKAEKYMAPLRQMFPRLETKDTIATKEELAPFQGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLTGHRRYIYGGHAKTVKPDKRKLALIFDDPNIRWQNFAQQMQDMLRHNDQKGMEMKKPSGSLYTFPMPDCMCKVPNTKNHD 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1051326 1064678 + ClCG08G000340.1 Cla08g00035 277690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00035 577 CDD O-FucT_plant 170 508 IPR024709 -
Cla08g00035 577 PANTHER - 14 576 IPR024709 -
Cla08g00035 577 Pfam GDP-fucose protein O-fucosyltransferase 170 503 IPR019378 -
Cla08g00035 577 PIRSF UCP009360 32 572 IPR024709 -
Cla08g00035 577 MobiDBLite consensus disorder prediction 1 45 - -
Cla08g00035 577 PANTHER O-FUCOSYLTRANSFERASE 9 14 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00035 - - - csv:101208796 1056.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00610 Cla-Chr1:6958059 Cla08g00035 Cla-Chr8:1051326 0 dispersed
Cla03g00709 Cla-Chr3:8567020 Cla08g00035 Cla-Chr8:1051326 4.41E-97 dispersed
Cla05g02595 Cla-Chr5:37207051 Cla08g00035 Cla-Chr8:1051326 2.07E-104 dispersed
Cla08g00035 Cla-Chr8:1051326 Cla11g01520 Cla-Chr11:28847104 0 dispersed
Cla08g00035 Cla-Chr8:1051326 Cla01g01796 Cla-Chr1:32884736 4.63E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1491 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00035 Cam08g0034 Cec08g0216 Cco08g0089 Clacu08g0051 Cmu08g0050 Cre08g0040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00026 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010910 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00035 Cla_Chr08 FPKM 54.798023 60.617199 3.369876 3.740321 0.689248 0.863947 0.660653 0.0 0.128213 0.0