Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00041 ATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAAACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTCGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCTCAACGTGTTCCCAGATCATCTACCAAAAAGGATGGCCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTTACTTTCAATATTTTGTGTTGTACATTCAGTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTCCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGGATTGGAGTTTCGGATGTGGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTTATGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGCCATGGGCAGAGTTCATCAGTGGCTCAGTCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAACGCTCGATCTGGGTCCAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTCCAGACAGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAATGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCACCACGCAGTCGTTCAGATGCATCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGGCTGGGGATGTTACAACAACAATGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTGTTCTGTAAGGCATGCTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCACGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTCTTTTCATTTATTATATAGATAAGGACATGTATTGTTTTCCATTAGATCATGACGATGTGTATGTTATCCAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGAATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA 1866 44.16 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGLFIYYIDKDMYCFPLDHDDVYVIQQIMASRQDYGSSNFQGNYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1160703 1167398 - ClCG08G000400.1 Cla08g00041 277696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00041 621 MobiDBLite consensus disorder prediction 288 306 - -
Cla08g00041 621 Pfam Smg-4/UPF3 family 6 168 IPR005120 -
Cla08g00041 621 MobiDBLite consensus disorder prediction 484 514 - -
Cla08g00041 621 CDD RRM_like_Smg4_UPF3 9 94 - -
Cla08g00041 621 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 1 525 - -
Cla08g00041 621 MobiDBLite consensus disorder prediction 356 371 - -
Cla08g00041 621 MobiDBLite consensus disorder prediction 324 439 - -
Cla08g00041 621 MobiDBLite consensus disorder prediction 324 343 - -
Cla08g00041 621 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Cla08g00041 621 MobiDBLite consensus disorder prediction 168 200 - -
Cla08g00041 621 MobiDBLite consensus disorder prediction 419 439 - -
Cla08g00041 621 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 1 525 IPR039722 GO:0000184
Cla08g00041 621 MobiDBLite consensus disorder prediction 376 415 - -
Cla08g00041 621 Gene3D - 2 97 IPR012677 -
Cla08g00041 621 MobiDBLite consensus disorder prediction 288 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00041 K14328 UPF3, RENT3; regulator of nonsense transcripts 3 - csv:101208317 922.539
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1466 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00041 Cam08g0040 Cec08g0212 Cco08g0093 Clacu08g0056 Cmu08g0054 Cre08g0044 . . . . . . . . . . . . . . . . Sed10g2126 . . . . . . . . Bhi06g00236 Tan10g2035 Cmetu09g1975 . . . . . . . . . . . Lsi08g00031 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003365 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00041 Cla_Chr08 FPKM 31.517241 31.846577 31.638121 32.986187 32.195934 23.900732 35.896755 18.300623 22.428787 25.189987