Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00042 ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGTGAAAGAACTGTTCATGGAACATTAAAAAGGAATAAAAACAAAACAACCTCTTCCCACTTCAAACTCAATGTTCCCTTCATTTCTAGGCTTTGCCCCATCAATGTTTTTATAAACCTAGTATTAGTTATTTATGTGGAGCTTGAGAAAAGCAAGAGTGTGAGATCAATTGTTTTAGGCATATTGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGTAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATATTGGGTGA 711 38.68 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSERTVHGTLKRNKNKTTSSHFKLNVPFISRLCPINVFINLVLVIYVELEKSKSVRSIVLGILHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHIG 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1179583 1189210 - ClCG08G000410.2 Cla08g00042 277697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00042 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla08g00042 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 226 - -
Cla08g00042 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla08g00042 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla08g00042 236 Coils Coil 137 176 - -
Cla08g00042 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla08g00042 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla08g00042 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla08g00042 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 226 - -
Cla08g00042 236 Pfam K-box region 119 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla08g00042 236 ProSiteProfiles K-box domain profile. 98 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla08g00042 236 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Cla08g00042 236 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cla08g00042 236 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cla08g00042 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02351 Cla-Chr1:37256979 Cla08g00042 Cla-Chr8:1179583 2.16E-63 dispersed
Cla02g01796 Cla-Chr2:32977982 Cla08g00042 Cla-Chr8:1179583 1.06E-60 dispersed
Cla08g00042 Cla-Chr8:1179583 Cla01g00316 Cla-Chr1:3354653 1.16E-40 dispersed
Cla08g00042 Cla-Chr8:1179583 Cla03g00684 Cla-Chr3:8285530 3.12E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61504 PF01486 K-box 5.20E-18 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00042 K09264 - csv:101208072 315.464