Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00049 ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA 579 41.28 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAQIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGIMTLDELDMFEKQLEIWICQVRTTKELILKAANKYLHDKMDENISNTTNIEPVNITNCQYPLTIQDELFQLCT 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1269197 1273848 - ClCG08G000470.1 Cla08g00049 277704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00049 192 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 189 - -
Cla08g00049 192 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla08g00049 192 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla08g00049 192 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla08g00049 192 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla08g00049 192 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Cla08g00049 192 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 - -
Cla08g00049 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Cla08g00049 192 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Cla08g00049 192 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla08g00049 192 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cla08g00049 192 Pfam K-box region 87 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00049 Cla-Chr8:1269197 Cla08g01053 Cla-Chr8:23220342 4.60E-36 dispersed
Cla08g00049 Cla-Chr8:1269197 Cla05g00211 Cla-Chr5:1884372 7.06E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61505 PF01486 K-box 9.90E-09 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00049 - - csv:105435626 357.836