Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00068 ATGGGCTGCATGTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCGATCACAAAGAGTCTGAAAAAGATTTGAACAAATCTTCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGCTGTTAGAGATTCAGTTGTCAAGGCAGGCATCTAAACCAAATGGGGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCCATAAAGGCTGCAAAACCAAATAATGATAATGCTTCAGGAGGTGGAAAGCAGCCTGAGATTTTTCGGTTAGCTAGCTTGTCTAAAGGGGCTGAAGCTGAACTTGTCATGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGCCGGGCTGACTCCTTTGAAAAGTTAGACAAACCCTGGGATGGGTATGTAGATAGGAATTCCAAGTTAAAAGATTTGTCCATTCTGAATACGATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACATGTAAAATTGTGGCATTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGCTCCTGGACATAAGTTTACGGAGGCTCAGATTAAATGTTATGTGCAACAATTGCTGCATGGACTTGAGCACTGTCATAGTCGAGGAATTCTGCACCGGGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGTGCTTAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGCCGGGTTGTGACGTTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACCCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGCTGTATCATTGCTGAGCTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCAGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTTCTTCAGCTCTGGCTCTTGTTAATAAGCTACTTGCTATTGAACCAGAGCACAGAGGATCAGCTACTTTAGCCCTCAGGAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCGTCAAGCTTACCAAAATATCCGCCGAGCAAAGAATTCGATGCCAAGCTGCGGAATGAAGAAGAAAAAAAGTATGGTTCGAAACTTGTTTCTCTAGTAGTCATTGCGGAAGCTGTGAAGGGACGCCATCCTGAATCGGTAAGAAGGGGCTCAAGAGACACCAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTACTATGAAGGCACACCCAATCTCGAAAAAAATGAGTGTGAAATACAACCCTCAAGAAGACAGTGAGCCTCCAAGAGTTGCGCAAAATCGGTACAACCACTCAACTTCTATGGTGCACCCAAGCATTGTAGGTTTATGGGGTAAGCCTACCGAAGCCTTGAGAAATTGTGCAGAGTCAAAGACAAAGAAATCTCAGATGCATCAGTCAGTGGGAGATTTATCAACCTCTTCTCTGAAGAAGGAAGACTCGGTGTCTACTAAAGATTGTGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGACTCGACAAAGCGAAGACAAACAAGAGTTATGGTGATCAGAGACTAACTTCGGTAACATCAAAGGTAGAAGATGGTTCTGCTGCTCTCAAACTGAATGCTGCAACTGTCTGCAAAGAACCATAA 2094 44.22 MGCMCSRDSSEPEDSDHKESEKDLNKSSVQLVAPSPSKREDMLLEIQLSRQASKPNGGSVHKAKANGGSVHRAKEDDESENKSIKAAKPNNDNASGGGKQPEIFRLASLSKGAEAELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKPWDGYVDRNSKLKDLSILNTIGQGTYSSVYKARDLETCKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCIIAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEEKKYGSKLVSLVVIAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDITMKAHPISKKMSVKYNPQEDSEPPRVAQNRYNHSTSMVHPSIVGLWGKPTEALRNCAESKTKKSQMHQSVGDLSTSSLKKEDSVSTKDCGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTNKSYGDQRLTSVTSKVEDGSAALKLNAATVCKEP 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1510168 1514437 - ClCG08G000660.1 Cla08g00068 277723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00068 697 ProSiteProfiles Protein kinase domain profile. 165 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00068 697 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 166 659 - -
Cla08g00068 697 MobiDBLite consensus disorder prediction 584 610 - -
Cla08g00068 697 CDD STKc_CDK9_like 167 449 - -
Cla08g00068 697 Coils Coil 642 662 - -
Cla08g00068 697 SUPERFAMILY Protein kinase-like (PK-like) 163 457 IPR011009 -
Cla08g00068 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Cla08g00068 697 Gene3D Phosphorylase Kinase; domain 1 156 247 - -
Cla08g00068 697 MobiDBLite consensus disorder prediction 587 605 - -
Cla08g00068 697 PANTHER CELL DIVISION PROTEIN KINASE 78 150 - -
Cla08g00068 697 PANTHER CELL DIVISION PROTEIN KINASE 166 659 - -
Cla08g00068 697 MobiDBLite consensus disorder prediction 68 85 - -
Cla08g00068 697 ProSitePatterns Protein kinases ATP-binding region signature. 171 194 IPR017441 GO:0005524
Cla08g00068 697 SMART serkin_6 165 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00068 697 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 78 150 - -
Cla08g00068 697 MobiDBLite consensus disorder prediction 9 25 - -
Cla08g00068 697 MobiDBLite consensus disorder prediction 1 99 - -
Cla08g00068 697 Pfam Protein kinase domain 167 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00068 697 MobiDBLite consensus disorder prediction 501 523 - -
Cla08g00068 697 Gene3D Transferase(Phosphotransferase) domain 1 248 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01554 Cla-Chr1:30173845 Cla08g00068 Cla-Chr8:1510168 4.62E-139 dispersed
Cla08g00068 Cla-Chr8:1510168 Cla11g00055 Cla-Chr11:721799 0 dispersed
Cla10g01200 Cla-Chr10:26659224 Cla08g00068 Cla-Chr8:1510168 5.30E-16 dispersed
Cla08g00068 Cla-Chr8:1510168 Cla03g01582 Cla-Chr3:31590266 5.31E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80717 PF00069 Pkinase 1.10E-69 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00068 K08819 - csv:101208709 1183.7