Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00080 ATGGCGTTGAATATGAAAACCCTCACCCAAGCCCTGGCCAAGACCGCCGCGGTGATCGAGAAAACCGTTCATACCACTGTCCAGGAGGTCACCGGACCCAAGCCCCTTCAGGATTACGAGCTTCTTGATCAGATCGGCTCCGCTGGTCCCGGCATGGTTTGGAAATTGTATTCTGCGAAGGCTCGTGATTCTTCGCGGCCTCAGCAATATCCCACTGTTTGCGTATGGGTTTTGGATAAGAGGGTTCTGTCGGAGGCCAGGGCTCGCGCGGGGCTGTCGAAGTCTGTCGAGGATTCGTTTTTGGATCTGATTCGAGCCGATGCGGGGCGGTTGGTGAGGCTGAGGCATCCGGGAGTGGTTCATGTGGTGCAGGCGTTGGATGAGAACAAGAATGCCATGGCCATGGTTACTGAGCCGCTTTTTGCGTCCGTGGCAAATGTTGTTGGGAATGTGGACAATGTTGCTAAGGTTCCTAAGGAGCTCATTGGTTTGGAAATGGGATTACTGGAAATAAAGCATGGTTTGCTTCAGATAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCATCGGGCTATATCTCCGGAGAATGTCCTCATCACTTCAAATGGAGCTTGGAAACTTGCTGGATTTGGCTTTGCAATTCCAGCAGATCAGACTTCGAGTGACATGGCTACCATGCAGGCTTTCCACTATGCCGAATACGATGTGGAAGATTCTGTGCTGCCTCTTCAGCCATCTCTGAATTACACTGCTCCTGAATTGGTTAGGAGTAAATCATCTTTGGCTAGTTGTTCCTCAGATATTTTCAGCTTTGGATGCCTTGCTTACCATTTGGTTGCTAGAAAGCCTTTGTTTGACTGCCACAACAACGTTAAAATGTACATGAATTCCTTAACTTACCTGTCAACTGAGTCGTTTGCTTCAATTCCTCCGGAGTTAGTTCCTGACTTGCAGAGAATGCTATCATCAAATGAGTCTTTCCGGCCAACAGCATTGGAATTCACGGGTTCCCCATTTTTTCGAGATGACACTAGGCTGCGTGCTCTTCGCTTTCTCGACCACATGCTTGAAAGAGATAACATGCAAAAGTCTGACTTCTTGAAAGCTCTATCTGATATGTGGAAAGATTTTGATTCCCGTATATTGCGCTATAAGGTCCTTCCACCTCTTTGTGCAGAATTACGGAATCTGGTTATGCAGCCTATGATACTTCCCATGGTACTCACAATAGCAGAGTCGCAGGATAAACATGATTTTGAGCTATCAACTTTGCCATCTCTTGTTCCCGTCCTGAGTACTGCTGCAGGTGACACATTGTTGCTGCTTGTGAAGCATGCCGATCTTATAATTAACAAGACCAATCAAGAACAATTAATAACAAATGTCCTGCCGTTGATTGTTCGTGCTTATGATGATAATGATGCTCGCATACAAGAGGAAGTTCTGAGGAAATCAGTTTCCCTTGCTAAGCAACTTGACACACAGTTAGTGAAACAAGCAATTTTGCCTCGTGTTCATGGTTTAGCTCTAAAGACAACAGTTGCTGCGGTTAGAGTCAATGCTTTGCTGTGCTTTGGAGAATTGGTTCAGACGCTTGATAAACATGCAGTTCTAGAAATCTTGCAAACAATTCAACGTTGTACAGCTGTGGACCGATCTGCTCCCACGCTCATGTGTACCCTTGGGGTTGCAAACTCAATCCTTAAGCAGTATGGAATCGAATTTATTGCGGAGCACGTTCTTCCTTTACTCGTACCTCTTCTTACAGCGCAACAATTAAATGTTCAGCAGTTTGCTAAATATATGCTTTTTGTCAAGGACATTCTCAGGAAAATAGAAGAGAAAAGAGGAGTCACTGTTTCTGATTCTGGAATACCGGAGATGAAATCAACTCTGGTTTCTAATGGCCCACTGTCCCAATCATCAAGCAGAGCAGGTGATACCGTCGTTCCAACAATAAAAAGTCGACCTGCTTGGGATGAAGATTGGGGGCCTACTTCTAAGGGACATACACCCCCACAAAATTCTTCTAGCAATATCTCGTCTGCTCCTGTTCTTGGTGGTCAATCCATAACAGGAAATTCTATACAAACAAATTCTGTTGCGACAACATCTCTGTCTAGTAATCAAACTGTTGCATCCTGCCTTCCAGTTAATATTGAGTGGCCTCCTCGGAACTCTACTGGCGGTGCACCTAGAATAGCTGATTCTGGGATGCAAGCAACTACAGGAGCATCATCCACTTCAAACTCAGATGATGTGGACCCTTTTGCTGACTGGCCTCCACGCCCTAGTGGCTCACTAGGAGGTGGTTCCGGAGTTTCCAACAATGGGGCGGTTGGGCCATCCATGAACAAATATGGAACTAGTTCATCCATGAGTACACCAAACAGTTTGAACTCTCAAACAAACAGCAATGCCAGTTGGACCATCAACAACAAAAATACCAGTGAACCGATGAGACAAAGTCATGGAATTTTGACTTTCAACTCAAGCAGTTTGGGGACTGGGGGCCTCAATTCCCAAAGTTCTATTGGATTCCAGAAGCAAAACCAGGGAATATCATCCCAACATGCATATGATGCCCACAAAAAGTTCACTGATCTTGGATCCATATTTGCACCTAGTAAGAATGAGAATAATATTGCTCCTAGACTTGCACCACCTCCCTCAACTGCTGTCGGTAGAGGAAGAGGAAGAGGGAGAGGGGTTTCATCAACATCTCGTTCTACTCAAAACAAATCATCATCCGGACAACCTCCCTTAATGGACTTGCTATTTGTCATCTTGTGGCACCCAGAGATGGATTTGACGAACTGCATATCAGGTATGAGATGTAAGTTGGGGATGCGAGTTGATATTAAAACG 2880 45.31 MALNMKTLTQALAKTAAVIEKTVHTTVQEVTGPKPLQDYELLDQIGSAGPGMVWKLYSAKARDSSRPQQYPTVCVWVLDKRVLSEARARAGLSKSVEDSFLDLIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANVVGNVDNVAKVPKELIGLEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWKLAGFGFAIPADQTSSDMATMQAFHYAEYDVEDSVLPLQPSLNYTAPELVRSKSSLASCSSDIFSFGCLAYHLVARKPLFDCHNNVKMYMNSLTYLSTESFASIPPELVPDLQRMLSSNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSDFLKALSDMWKDFDSRILRYKVLPPLCAELRNLVMQPMILPMVLTIAESQDKHDFELSTLPSLVPVLSTAAGDTLLLLVKHADLIINKTNQEQLITNVLPLIVRAYDDNDARIQEEVLRKSVSLAKQLDTQLVKQAILPRVHGLALKTTVAAVRVNALLCFGELVQTLDKHAVLEILQTIQRCTAVDRSAPTLMCTLGVANSILKQYGIEFIAEHVLPLLVPLLTAQQLNVQQFAKYMLFVKDILRKIEEKRGVTVSDSGIPEMKSTLVSNGPLSQSSSRAGDTVVPTIKSRPAWDEDWGPTSKGHTPPQNSSSNISSAPVLGGQSITGNSIQTNSVATTSLSSNQTVASCLPVNIEWPPRNSTGGAPRIADSGMQATTGASSTSNSDDVDPFADWPPRPSGSLGGGSGVSNNGAVGPSMNKYGTSSSMSTPNSLNSQTNSNASWTINNKNTSEPMRQSHGILTFNSSSLGTGGLNSQSSIGFQKQNQGISSQHAYDAHKKFTDLGSIFAPSKNENNIAPRLAPPPSTAVGRGRGRGRGVSSTSRSTQNKSSSGQPPLMDLLFVILWHPEMDLTNCISGMRCKLGMRVDIKT 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1644569 1678348 + ClCG08G000780.1 Cla08g00080 277735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00080 960 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 930 - -
Cla08g00080 960 MobiDBLite consensus disorder prediction 723 825 - -
Cla08g00080 960 Gene3D Transferase(Phosphotransferase) domain 1 160 347 - -
Cla08g00080 960 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Cla08g00080 960 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 930 - -
Cla08g00080 960 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00080 960 MobiDBLite consensus disorder prediction 907 923 - -
Cla08g00080 960 MobiDBLite consensus disorder prediction 881 923 - -
Cla08g00080 960 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Cla08g00080 960 Gene3D - 348 621 IPR011989 -
Cla08g00080 960 SUPERFAMILY ARM repeat 346 605 IPR016024 -
Cla08g00080 960 MobiDBLite consensus disorder prediction 672 695 - -
Cla08g00080 960 MobiDBLite consensus disorder prediction 773 825 - -
Cla08g00080 960 Pfam Protein kinase domain 110 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00080 960 MobiDBLite consensus disorder prediction 743 758 - -
Cla08g00080 960 MobiDBLite consensus disorder prediction 633 653 - -
Cla08g00080 960 CDD PK_SCY1_like 45 346 - -
Cla08g00080 960 MobiDBLite consensus disorder prediction 633 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00080 K17541 SCYL2; SCY1-like protein 2 - csv:101223115 1624.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00080 Cla-Chr8:1644569 Cla11g01059 Cla-Chr11:21420615 4.42E-20 dispersed
Cla08g00080 Cla-Chr8:1644569 Cla07g00638 Cla-Chr7:12421762 4.01E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80718 PF00069 Pkinase 1.10E-23 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00080 Cla_Chr08 FPKM 8.621993 9.078891 10.904814 12.16957 3.875978 8.73336 6.868773 8.366055 8.540884 10.081284