Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00081 ATGCATTGTGAAAGCCAAATGAGGTGGTTCATATGGGGAGTTCTCTTCCTCCTAAGTGATCTTTCCTCTTCATCTTCTCCGGCACCGGCGGCTTTCGTCGGAGTTCAAGACGGCCATTTTCAGTTAAATGGTTCTCCATTTGTGTTCAATGGCTTTAACTCTTACTGGATGATGTCCGTCGCTGCTGACCCGAACCAACGCCACAAAGTCTCCGACGTCTTTCGAGATGCAGCCGCTGCCGCCCTCACAGTCTGCCGGACGTGGGCGTTTGCCGACGGCGGCTACCATGCCCTCCAAATCTCTCCCGGCGTTTATGATGAGAGAGTTTTTCAGGGTCTTGATTTTGTGATATGGGAAGCAAGAAAGTATGGAATTAGAATGATACTGAGTTTGGTGAATAATTACAAAGACTACGGCGGAAGAGCACAGTATGTACGGTGGGCCGAAGCTGCCGGCGATCAAATTCATAACGACGATGACTTCTATACTAATCAACTTATCAACACCTACTACAAAAACCATCTTCAGAAAGTGTTGAGAAGGAAGAATTCAATAAATGGTTTGAGATATATGGATGATCCGACCATTATGGGATGGGAACTTATGAATGAACCACGTTGTGAAGTTGATTCCTCAGGCAACACTATCAATAGATGGGTAGAAGAAATGGGAAGTTATGTGAAATCAATTGACAAAAAACATTTGGTGGGCATTGGAATGGAAGGATTCTATGGAGATTCAAGCCCAACCAAAATCAAATCCAACCCAAATAGTTACAAACTTGGCACTGATTTTATCGCCAACAATCTCAACAAATACATAGACTTTGCAACAATTCATGCATATCCTGATGCTTGGTCATTAACTAACAAAAGAGATGGTATGCTACCAGGGCAGAGTGAAGCCACCAAAATGGCATTCCTGGAGGAATGGATTACAACTCACTGGACAGACTCGAAGACTATCTTAAAGAAGCCATTGATTTTTGAAGAATTTGGAAAGTCAACCAAAGGCCAAAACCTAACATTCAGTGTAAGAGACAGAGATTTATTCCTGAGTAAGGTTTATTCAATCATCTACAACCTTGCAAGAAACGGAGCAACCATGGCTGGAGGTCTGGTCTGGCAAGTTATGGCTGAAGGAATGGAGTCGTATTACGATGGATATGAGATTGTTCTTTCCCAGAATCCTTCGACAAATTCCATTATTACACAACAGTCAAATAACATGGCTGCCCTTCATACTGTAAAACTCAACATTAAAACTCAACACCGCCTCAACAAAAGTAGATACTAA 1296 42.59 MHCESQMRWFIWGVLFLLSDLSSSSSPAPAAFVGVQDGHFQLNGSPFVFNGFNSYWMMSVAADPNQRHKVSDVFRDAAAAALTVCRTWAFADGGYHALQISPGVYDERVFQGLDFVIWEARKYGIRMILSLVNNYKDYGGRAQYVRWAEAAGDQIHNDDDFYTNQLINTYYKNHLQKVLRRKNSINGLRYMDDPTIMGWELMNEPRCEVDSSGNTINRWVEEMGSYVKSIDKKHLVGIGMEGFYGDSSPTKIKSNPNSYKLGTDFIANNLNKYIDFATIHAYPDAWSLTNKRDGMLPGQSEATKMAFLEEWITTHWTDSKTILKKPLIFEEFGKSTKGQNLTFSVRDRDLFLSKVYSIIYNLARNGATMAGGLVWQVMAEGMESYYDGYEIVLSQNPSTNSIITQQSNNMAALHTVKLNIKTQHRLNKSRY 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1679057 1685646 - ClCG08G000790.2 Cla08g00081 277736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00081 431 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 7 416 - -
Cla08g00081 431 PANTHER - 7 416 IPR045053 GO:0004553
Cla08g00081 431 SUPERFAMILY (Trans)glycosidases 32 401 IPR017853 -
Cla08g00081 431 Pfam Cellulase (glycosyl hydrolase family 5) 43 340 IPR001547 GO:0004553|GO:0071704
Cla08g00081 431 Gene3D Glycosidases 29 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00081 K19355 MAN; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] - csv:101206286 696.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01729 Cla-Chr2:32177479 Cla08g00081 Cla-Chr8:1679057 4.25E-121 dispersed
Cla05g01922 Cla-Chr5:31062630 Cla08g00081 Cla-Chr8:1679057 6.40E-145 dispersed
Cla08g00081 Cla-Chr8:1679057 Cla08g00762 Cla-Chr8:19979730 8.92E-113 dispersed
Cla08g00081 Cla-Chr8:1679057 Cla01g01923 Cla-Chr1:33936615 5.67E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1702 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00081 Cam08g0078 Cec08g0173 Cco08g0136 Clacu08g0091 Cmu08g0090 Cre08g0079 . . . . . . . Cme09g00081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012549 0 1 0 0 0 1 0 1 1 2 1 1 0 1 1 0 1 0 0 1 2 1 1 1 1 1 0 1 1 6 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00081 Cla_Chr08 FPKM 19.174564 18.774536 25.070454 23.612492 11.382529 11.521753 14.962144 19.722879 20.735159 23.566187