Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00099 ATGGGAGAGCCTAGCTCAATGGGGAGCCACGGCGGTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCGGAGATGGCAGCAGCGGCCTATGACGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCGCATCTTGTCAACTCTCTTCCCTTCCCTCTTAGCTCTACTCCTGACGACATCCGTGTTGCCGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCCCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTGTTGATGACATGGACGATGAGATGTGGGAGAATATGCATAATGATTCGTTCTCAATGGGGAGCCACGGCGGTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCGGAGATGGCAGCAGCGGCCTATGACGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCGCATCTTGTCAACTCTCTTCCCTTCCCTCTTAGCTCTACTCCTGACGACATCCGTGTTGCCGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCCCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTGTTGATGACATGGACGATGAGATGTGGGAGAATATGCATAATGATTCGTTGTGGGATCCTTAG 1083 55.12 MGEPSSMGSHGGATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFVDDMDDEMWENMHNDSFSMGSHGGATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFVDDMDDEMWENMHNDSLWDP 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2020262 2021891 + ClCG08G000980.1 Cla08g00099 277754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00099 360 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 Pfam AP2 domain 192 241 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Cla08g00099 360 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 SMART rav1_2 192 255 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 CDD AP2 191 251 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Cla08g00099 360 Gene3D AP2/ERF domain 192 251 IPR036955 GO:0003700|GO:0006355
Cla08g00099 360 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 ProSiteProfiles AP2/ERF domain profile. 192 249 IPR001471 GO:0003700|GO:0006355
Cla08g00099 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 5 169 - -
Cla08g00099 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 181 359 - -
Cla08g00099 360 SUPERFAMILY DNA-binding domain 191 250 IPR016177 GO:0003677
Cla08g00099 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 169 - -
Cla08g00099 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 181 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00099 Cla-Chr8:2020262 Cla08g01357 Cla-Chr8:26394613 1.46E-36 dispersed
Cla08g00099 Cla-Chr8:2020262 Cla08g00102 Cla-Chr8:2133136 1.34E-52 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61506 PF00847 AP2 1.10E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00099 - - csv:101207243 298.901