Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g00099 | ATGGGAGAGCCTAGCTCAATGGGGAGCCACGGCGGTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCGGAGATGGCAGCAGCGGCCTATGACGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCGCATCTTGTCAACTCTCTTCCCTTCCCTCTTAGCTCTACTCCTGACGACATCCGTGTTGCCGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCCCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTGTTGATGACATGGACGATGAGATGTGGGAGAATATGCATAATGATTCGTTCTCAATGGGGAGCCACGGCGGTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCGGAGATGGCAGCAGCGGCCTATGACGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCGCATCTTGTCAACTCTCTTCCCTTCCCTCTTAGCTCTACTCCTGACGACATCCGTGTTGCCGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCCCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTGTTGATGACATGGACGATGAGATGTGGGAGAATATGCATAATGATTCGTTGTGGGATCCTTAG | 1083 | 55.12 | MGEPSSMGSHGGATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFVDDMDDEMWENMHNDSFSMGSHGGATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFVDDMDDEMWENMHNDSLWDP | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2020262 | 2021891 | + | ClCG08G000980.1 | Cla08g00099 | 277754 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g00099 | 360 | PRINTS | Ethylene responsive element binding protein signature | 17 | 28 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | PRINTS | Ethylene responsive element binding protein signature | 39 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | Pfam | AP2 domain | 16 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | Pfam | AP2 domain | 192 | 241 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | SUPERFAMILY | DNA-binding domain | 15 | 74 | IPR016177 | GO:0003677 | |
Cla08g00099 | 360 | SMART | rav1_2 | 16 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | SMART | rav1_2 | 192 | 255 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | CDD | AP2 | 191 | 251 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | Gene3D | AP2/ERF domain | 16 | 75 | IPR036955 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | Gene3D | AP2/ERF domain | 192 | 251 | IPR036955 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | CDD | AP2 | 15 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | ProSiteProfiles | AP2/ERF domain profile. | 192 | 249 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g00099 | 360 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 | 5 | 169 | - | - | |
Cla08g00099 | 360 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 | 181 | 359 | - | - | |
Cla08g00099 | 360 | SUPERFAMILY | DNA-binding domain | 191 | 250 | IPR016177 | GO:0003677 | |
Cla08g00099 | 360 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 5 | 169 | - | - | |
Cla08g00099 | 360 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 181 | 359 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g00099 | Cla-Chr8:2020262 | Cla08g01357 | Cla-Chr8:26394613 | 1.46E-36 | dispersed | |
Cla08g00099 | Cla-Chr8:2020262 | Cla08g00102 | Cla-Chr8:2133136 | 1.34E-52 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61506 | PF00847 | AP2 | 1.10E-12 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g00099 | - | - | csv:101207243 | 298.901 |