Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00102 ATGGAACCCAATTATAGAGGCGTTCGTAAGCGTAAATGGGGAAAATGGGTCTCCGAAATCCGTGAACCGGGCAAAAAAACCCGAATCTGGCTCGGTAGTTACCATCTCCCGGAAATGGCCGCCGCTGCCTACGACGTCGCTGCCCTCCACCTCCGCGGCCCCGACGCCCGCCTCAACTTCCCCGAGCTGGCCGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAAGCCGCCGCCCACATGGCTGCATTGCGGCTCGCCAATACCAAGCCGCCGGACCCTCCGGCGCCGGTTCGAGTGGGGCTGTCCCCTAGCCAGATTCAAGCCATTAATGAGTCGCCGTTGGATTCTCCCACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGACTGGGACGAAGAATATAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATTTAA 474 57.59 MEPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNFPELADSFPRPASSSPDHIQAAAHMAALRLANTKPPDPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWDEEYNMHNHHSIWDYSSI 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2133136 2133609 + ClCG08G001010.1 Cla08g00102 277757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00102 157 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Cla08g00102 157 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700|GO:0006355
Cla08g00102 157 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700|GO:0006355
Cla08g00102 157 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677
Cla08g00102 157 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
Cla08g00102 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 4 153 - -
Cla08g00102 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 153 - -
Cla08g00102 157 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Cla08g00102 157 CDD AP2 3 63 IPR001471 GO:0003700|GO:0006355
Cla08g00102 157 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00102 Cla-Chr8:2133136 Cla11g00204 Cla-Chr11:2372697 2.32E-35 dispersed
Cla08g00183 Cla-Chr8:3779739 Cla08g00102 Cla-Chr8:2133136 6.15E-30 dispersed
Cla08g00099 Cla-Chr8:2020262 Cla08g00102 Cla-Chr8:2133136 1.34E-52 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61507 PF00847 AP2 3.20E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00102 - - csv:101207003 284.648