Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00152 ATGGATGCAATGGACGCGATCGAGGAGTTGGGAGAGCTGTCTGAAGCGATGCGCCAAGCGGCGGCTTTGCTTGCTGATGAAGATGTTGACGACAATTCTACTTCTGGTGCTTCTTCTCGTAGGGCTACGACTTTCCTCAACGTTGTGGCTTTGGGCAATGTTTTGGAGTTGTATTTACATCATAATTTAAAGCTTTTTTCAGTCAACAATTCTGTATTGGATATGGGTGCTGGCAAATCTGCAGTTTTGAATAGTTTAATTGGGCATCCTGTTTTGCCAACGGGTGAAAATGGTGCTACGCGAGCTCCAATAAGCATTGATCTACAGAGGGATGGTTCTTTGAGTACCAAATCAATCATTCTGCAGATTGATAATAAATCTCAACAGGTTTCTGCAAGTGCTTTGCGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCAGGAAAGGGCCGAGATGAAATATATCTAAAGCTTCGCACAAGTACAGCACCTCCACTGAAGTTGGTTGATTTACCTGGGCTTGATCAACGGGCCATGGATGAATCTGTGGTTAGTGAATATGCCGAACACAATGATGCAATTTTGCTAGTTATTGTACCAGCTGCTCAGGCTCCTGAAATTGCTTCATCTAGAGCCCTAAGATCTGCCAAGGAATTTGATAAAGATGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAGTCTCTTGCTGCAGTGCAAGCTCTCCTGTTAAATCAAGGGCCAGCACGAGCGTCAGATATCCCATGGATTGCTTTAATTGGTCAATCTGTTTCAATAGCTACTGCACAGTCTGGATCTGTTGGCTCTGAGAATTCCATGGAGACTGCTTGGAGAGCAGAGAGTGAAAGTCTAAAATCTATACTAACTGGTGCACCTCAAAGTAAGCTAGGCAGGCTAGCTTTAGTTGATGCATTGTCCCAACAGATCCGGAAGCGAATGAAAGTCCGGCTTCCTAATCTTCTCTCTGGGTTACAAGGGAAGTCTCAAGTGGTTCAGGATGAGTTGGTTAGGCTTGGTGAGCAAATGGTCAATGGTGTTGAGGGGACTAGAGCTCTAGCTTTGGAACTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGGCTGGGGCTGGACTTATAGTGCCTCTCTTCAACTTCTGTATTCTTTCTATAAAATTAAGTATAGATGTGTTGAAACACGTGGAAGGGGAAATGGAAGCAAATTGTAAGGTAACAGATGATCTTGCTCTGAAGAGAAGTCTAACAATACCTAGCATATCTCAGGGTGCAGGTTGGAAAATTGTTGCTAGCTTTGAGGGGAATTTTCCAAATCGAATTAAGCAATTGCCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATTGTATTAGAAGCTGATGGTTATCAGCCCTATCTAATATCACCGGAGAAAGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGATGAGGTTGTGGCCATTGCAAGCGCTGCCCTGGATGGGTTTAAAAATGAAGCAAAAAAGATGGTCGTGGCGTTAGTTGACATGGAGAGAGCATTTGTCCCACCACAGCACTTTATACGTCTCGTACAAAGAAGGATGGAAAGACAGCGCCGGGAAGAGGAAGTGAAGACTAGATCATCAAAAAAAGGACAAGAGGCTGAACAAGCGGTGTTAAACAGGGCAAGTAGTCCTCAAACAAATAGTCAGCAAGCTGGTGGAAGCTTGAAATCAATGAAAGAAAAACCTAGTAAGGAAGAGAAGGAAGAGAAGGAAAGTTCGGGTTTGAAGACAGCAGGTCCTGAGGGAGAGATAACAGCTGGTTTCTTGTTAAAGAAAAGTGCAAAAACTAATGGGTGGAGCAGGCGATGGTTTGTCTTGAATGAGAAGACTGGAAAGCTTGGATATACCAAGAAGCAAGAAGAACCACGCTTTCGTGCTGTCATTACTTTAGAGGATTGTAATATTGAAGAAGTTACAGATGAGGAAGAGCCTACACCTTCAAAGAGTTCAAAGGATAAAAAGGCTAATGGGCCAGATTCTGGAAAAGGATCAAGTCTTGTGTTTAAGATTACCAGCAAAGTTCCATATAAAACTGTTTTGAAAGCCCATAGCGCTGTTGTTTTGAAAGCGGAGAGTGTTGCAGACAAGGTGGAATGGACAAACAAGATACGCAATGTCATTCAACCATCCAAAGGAGGACAAACGAGAGGTGCATCCTCCGAAGGTGGTCTTACCATGCGGCAGAGTCTATCTGATGGTTCCCTAGATACTATGGCTCGAAAACCTGCTGATCCTGAAGAAGAGCTGCGGTGGATGTCTCAAGAAGTTCGTGGTTATGTTGAAGCAGTTTTGAATAGTTTGGCTGCAAATGTCCCCAAGGCTGTTGTACTTTGTCAAGTTGAGAAGGCCAAGGAAGATATGCTAAATCAATTATATAGCTCGATCAGTGCCCAGAGCTCAGCCAGGATTGAGGAGCTTCTTCAGGAGGATCAGAATGTAAGACGGAGGAGAGAACGTTATCAAAAACAATCCTCTCTCCTTTCAAAACTTACGCGCCAGCTCAGCATTCATGATAGTCGAGCAGCTGCTGCTGGTTGGTCTGATAGTGCTGCAGAAAGTAGTCCCAAAACTAGCGGATCACCTGGAGATGAATGGAGATCTGCATTTGATGCTGCTGCTAATGGTCGGGCTGACATCAGAAGATCTTCTTCCAATGGCCACAGTAGACATTCTAGTGATCCTGCACAGAACGGTGACATAAACTCAGGCTCAAACTCTAGCAGCCGTCGCACTCCAAACCGGCTGCCACCAGCACCTCCGCAATCTTCTTCTGGTTCCAAATACTTCTAG 2928 44.19 MDAMDAIEELGELSEAMRQAAALLADEDVDDNSTSGASSRRATTFLNVVALGNVLELYLHHNLKLFSVNNSVLDMGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSTKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKGRDEIYLKLRTSTAPPLKLVDLPGLDQRAMDESVVSEYAEHNDAILLVIVPAAQAPEIASSRALRSAKEFDKDGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWIALIGQSVSIATAQSGSVGSENSMETAWRAESESLKSILTGAPQSKLGRLALVDALSQQIRKRMKVRLPNLLSGLQGKSQVVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEAGAGLIVPLFNFCILSIKLSIDVLKHVEGEMEANCKVTDDLALKRSLTIPSISQGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTRSSKKGQEAEQAVLNRASSPQTNSQQAGGSLKSMKEKPSKEEKEEKESSGLKTAGPEGEITAGFLLKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEEPRFRAVITLEDCNIEEVTDEEEPTPSKSSKDKKANGPDSGKGSSLVFKITSKVPYKTVLKAHSAVVLKAESVADKVEWTNKIRNVIQPSKGGQTRGASSEGGLTMRQSLSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSARIEELLQEDQNVRRRRERYQKQSSLLSKLTRQLSIHDSRAAAAGWSDSAAESSPKTSGSPGDEWRSAFDAAANGRADIRRSSSNGHSRHSSDPAQNGDINSGSNSSSRRTPNRLPPAPPQSSSGSKYF 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2948058 2961952 - ClCG08G001510.1 Cla08g00152 277807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00152 975 Pfam Dynamin family 75 233 IPR045063 -
Cla08g00152 975 MobiDBLite consensus disorder prediction 754 791 - -
Cla08g00152 975 MobiDBLite consensus disorder prediction 934 958 - -
Cla08g00152 975 ProSiteProfiles PH domain profile. 628 754 IPR001849 -
Cla08g00152 975 MobiDBLite consensus disorder prediction 754 781 - -
Cla08g00152 975 ProSiteProfiles GED domain profile. 795 888 IPR020850 -
Cla08g00152 975 Gene3D Dynamin, middle domain 747 863 - -
Cla08g00152 975 Gene3D Dynamin, middle domain 412 521 - -
Cla08g00152 975 Gene3D - 631 746 IPR011993 -
Cla08g00152 975 Pfam Dynamin GTPase effector domain 793 875 IPR003130 GO:0003924|GO:0005525
Cla08g00152 975 Gene3D - 12 380 IPR027417 -
Cla08g00152 975 PANTHER DYNAMIN 5 391 IPR022812 -
Cla08g00152 975 PANTHER DYNAMIN-2A 5 391 - -
Cla08g00152 975 MobiDBLite consensus disorder prediction 681 710 - -
Cla08g00152 975 MobiDBLite consensus disorder prediction 687 704 - -
Cla08g00152 975 PANTHER DYNAMIN-2A 440 516 - -
Cla08g00152 975 PANTHER DYNAMIN 440 516 IPR022812 -
Cla08g00152 975 SMART GED_2 790 876 IPR003130 GO:0003924|GO:0005525
Cla08g00152 975 MobiDBLite consensus disorder prediction 604 622 - -
Cla08g00152 975 MobiDBLite consensus disorder prediction 563 627 - -
Cla08g00152 975 MobiDBLite consensus disorder prediction 890 975 - -
Cla08g00152 975 SMART dynamin_3 42 265 IPR001401 GO:0003924|GO:0005525
Cla08g00152 975 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 92 101 IPR019762 -
Cla08g00152 975 PANTHER DYNAMIN-2A 515 904 - -
Cla08g00152 975 PANTHER DYNAMIN 515 904 IPR022812 -
Cla08g00152 975 Pfam Dynamin central region 285 517 IPR000375 -
Cla08g00152 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 342 IPR027417 -
Cla08g00152 975 Pfam PH domain 633 753 IPR001849 -
Cla08g00152 975 SMART PH_update 629 756 IPR001849 -
Cla08g00152 975 Coils Coil 849 869 - -
Cla08g00152 975 PRINTS Dynamin signature 66 84 IPR022812 -
Cla08g00152 975 PRINTS Dynamin signature 222 238 IPR022812 -
Cla08g00152 975 PRINTS Dynamin signature 203 221 IPR022812 -
Cla08g00152 975 PRINTS Dynamin signature 91 108 IPR022812 -
Cla08g00152 975 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 63 333 IPR030381 GO:0005525
Cla08g00152 975 SUPERFAMILY PH domain-like 629 754 - -
Cla08g00152 975 MobiDBLite consensus disorder prediction 577 602 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00152 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1537.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00152 Cla11g00799 CCT
Cla08g00152 Cla11g00799 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00152 Cla-Chr8:2948058 Cla01g00644 Cla-Chr1:7418943 2.32E-07 dispersed
Cla11g00799 Cla-Chr11:11724972 Cla08g00152 Cla-Chr8:2948058 4.56E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00152 Cla_Chr08 FPKM 3.099498 3.24466 2.6603 2.714676 6.55584 6.711328 7.394411 0.683861 0.444383 0.422817