Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00153 ATGGTTACTGCAGCGGTTGAGAATCGGGGAAGCGATATGGTAATTGAAGGTAACGAACAGAAGCCGAAGAACATTGTGTCTGATGGGTTCGATGCCAATTATCTCAAAATTTACTACGGGAAGCTTTTCCCGCATGCTGATTTTTTTAAATGGATGTCTTATGGAAATGATGGCAAGCATCCGGGCAGTGACCAATCCTATTTTGGCCGAAGAGAGTTTTCATTCACCTTAGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTCTGTCAGAAATGGAAAATTCGATCAAGGAAAAATGTCCATTTAAAATTGATATTGGGCCTGTATACAGCGTGGATCCTGCAAAGAGACATGCATATGCTGGCGATAATGTATTTACTCCAGTGGAGAGAGAGCTGGTTTTTGATATTGATATGACCGATTATGATGATGTTAGATATTGTTGTTCTGGAGCTGATGTTTGCTTGGATTGCTGGCCTTTAATGACAGCTGCTATCAAAGTGATTGATACTACCCTCCGAGATGACTTTGGATTTAACCACATTCTATGGGTATTTAGTGGTCGACGTGGTGTTCACTGTTGGGTCTGTGATGGCAAAGCTAGAAGGTTGTCCAATGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGGTAATGAAAGTAGTCGCAAGAAAATTTCTCTAACTGGTCCAGTTCTTCATCCATTTCTCGCGAGATCATACATAGAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTTTGTAGTCAAAAGATTTTCTCAACTGAGGAGAGATATGAGAAAATATTAGATATGATTCATGATGAATCCATTACTTCAGAGCTTCGGGGAAGGTGGCAAGATAATAGGCGACCCTCTAAAAATGATGTTAACTCAGTACGATGGGAACAACTGAAAAATATGTTGCAATCAGGGAAACATAAGGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCGTTTACCTACCCCAGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTATCTGTGTCCCTATTGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGCTCCTAGAAGAACTTAATGCTGCAGACATGGAAGTAGATAGTGAGACTGACTGGGATAGAACCTCACTTGGGGAGTCTATTAGGTTTTTCAGGTCCGCATTTTTACAGCCGTTACTGAAATCATGCAAGCATTTCAATGTGGCATTTGGTAAATCAAGGAAAGAAATAATGAAGTTGAAGCTTGACAGCGAGAGCTCACAGAAGGCATGCAAGCTACAGAAAAAGCATGGTAAAAAGAAAAGCCACGTCAATGAAAGCAATGCCCTATTGGAAAAGCAAAACAATGTCGAACAACATTTAGGACAAGACGCTCCAACCCTAGATGAGGCTCCATTACAACAACATTTAGATTCTGCTCCACCCTTTGATTGTAACGAGGATCACGTCGAAGCAGGCGACAACCATGGTAATTTAGAGAATGATCATGACCAAGAAAACGGGAGTGACAACCCCGTACCTGATCAAGTAGATGAGGAGAGTGATTCATCTGAGGATGAGGTAGCTCCTAGGAACACAATTGGAGATGTTCCCTTGGAATGGTATAGAGATGAGAAACATATTGGATATGACATATCTGGAAAGAAAATATTGAAGAAAGAAAGAGACGACAAATTACAATCATTTTTAGCAAATGCTGATGACTCCAAAAGTTGGCGCAAGGTATATGATGAATATAATGATGAGGTAATAGAGTTATCGAAGGAAGAAGTCAGGCAACTGCGGAGACTACTCAAAGGAAAAGCTCCGCATGCAGACTTTGACCCATATCCGTCCTATGTTGATTGGTTTGAGTGGGACGATGCTAAGCATCCACTATCAAATGCACCTGAACCAAAGAGGCGTTTTATCCAGTCAAAATGGGAAGCCAAGAAGGTTGTTCAATTAGTTCGGGCAATTCGAAATGGACATATTAACTTTGATAAGCCCAAAGAAGAGCAACGTTTCTACCATTTGTGGGGTGATGATTCTAGCTCCACAGAGAAGACCACACATTTGTCTTACATTCCTGCACCAAAACCAAAGTTGCCGGGTCACGATGAATCATATAATCCTTCATTGGAATATATCCCTACTCAAGAAGAAATAAACTCATATCAGTTAATGTATGAAGAAGATCAACCAAAGTTTATTCCTAGGAGGTTTACATCTATGAGGAGTGTACCTGCCTATGACAATGCTCTTAAGGATGCATTTGAACGTTGTTTGGATTTATACTTGTGCCCTCGTGTTCGGAAGAAACGTATTAATATTGATCCTGAATCTTTGAAACCTAAGCTGCCAAACCGGAAAGATCTTAAACCTTATCCAACTACATGCTATCTTGAATATAGAGGTCATAAGGATGCTGTAATGTCCATTTCAACTGAAGCCAATGGCCAATGGATTGCTTCAGGTTCATTGGATGGAACAGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGGGAGCTTGGGGAAGCTGTGAAGTATGTAGCTTGGAATCCTAAGCCTGATCTTCCGATATTGGCTGCTGCTGTGGGTGTTGATGTATTGCTTTTAAACACTGGTTTGGGGGATGGAGAGGTTCAAGCAAAAATTAAGGAAATTCTCCATGTTGGCACACTTCCTGGAACAGAAAATTCTGATAAGACGCCAGTTGCAACATGGCTTCAAGATGACAAGATTGAGGGGATCAGATTGAGGCATTTTAAGACTGTATCTGCAGTTGAATGGCATCGTAAAGGAGATTACCTTTCAACAGTTATGCCAGCTGATATCCTATTCAGTTTTCTCTCTACAAAGCTTACACAAAAAATTCCATTCAAGTTGCATGGGCTTCCTGTTTCATCAGTTTTTCATCCCACTCAATCTATCCTCTTTGTATCAACGAAGAAGGACGTTCGTGTTTATAATCTATTGAAGCAAAAGCTCATAAAAAAACTGAAAACTGGACTTCGTGAAGTTTCTTCTATTGCTGTGCATCCAGCTGGTGATAATGTTATCGTGGGGAGCAGAGAAGGAAAATTATGTTGGTTTGACATGGACCTTTCATCACAACCTTACAAAATTCTCAGCTGCCATCCAAAAGATATCACAAATGTCGCCTTCCATCGATCACGTCCATTGTTTGCATCTTGCTCTGATGATGGCACAGCATATGTTTTCCATGGGATGGTTTACTCGGATCTTACACAGAATCCCCTTATTACACCGTTGGAAATACTAAGAGGACACAAAAACGTTAATGGAAGAGGAGTAATGGACTGCAAATTTCACCCGATGCAGCCATGGTTATTTACTGCTGGTGCAGATTCAGTGATCAAATTGTACTGTCATTGA 3489 40.7 MVTAAVENRGSDMVIEGNEQKPKNIVSDGFDANYLKIYYGKLFPHADFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNESSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLCSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVNSVRWEQLKNMLQSGKHKAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETDWDRTSLGESIRFFRSAFLQPLLKSCKHFNVAFGKSRKEIMKLKLDSESSQKACKLQKKHGKKKSHVNESNALLEKQNNVEQHLGQDAPTLDEAPLQQHLDSAPPFDCNEDHVEAGDNHGNLENDHDQENGSDNPVPDQVDEESDSSEDEVAPRNTIGDVPLEWYRDEKHIGYDISGKKILKKERDDKLQSFLANADDSKSWRKVYDEYNDEVIELSKEEVRQLRRLLKGKAPHADFDPYPSYVDWFEWDDAKHPLSNAPEPKRRFIQSKWEAKKVVQLVRAIRNGHINFDKPKEEQRFYHLWGDDSSSTEKTTHLSYIPAPKPKLPGHDESYNPSLEYIPTQEEINSYQLMYEEDQPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPNRKDLKPYPTTCYLEYRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVAWNPKPDLPILAAAVGVDVLLLNTGLGDGEVQAKIKEILHVGTLPGTENSDKTPVATWLQDDKIEGIRLRHFKTVSAVEWHRKGDYLSTVMPADILFSFLSTKLTQKIPFKLHGLPVSSVFHPTQSILFVSTKKDVRVYNLLKQKLIKKLKTGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSQPYKILSCHPKDITNVAFHRSRPLFASCSDDGTAYVFHGMVYSDLTQNPLITPLEILRGHKNVNGRGVMDCKFHPMQPWLFTAGADSVIKLYCH 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2969811 3004261 - ClCG08G001520.2 Cla08g00153 277808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00153 1162 MobiDBLite consensus disorder prediction 508 535 - -
Cla08g00153 1162 Pfam WD domain, G-beta repeat 1069 1105 IPR001680 GO:0005515
Cla08g00153 1162 Pfam WD domain, G-beta repeat 1121 1160 IPR001680 GO:0005515
Cla08g00153 1162 Pfam WD domain, G-beta repeat 826 861 IPR001680 GO:0005515
Cla08g00153 1162 Gene3D DNA primase, PRIM domain 23 431 - -
Cla08g00153 1162 ProSitePatterns Trp-Asp (WD) repeats signature. 849 863 IPR019775 -
Cla08g00153 1162 SMART WD40_4 823 862 IPR001680 GO:0005515
Cla08g00153 1162 SMART WD40_4 984 1021 IPR001680 GO:0005515
Cla08g00153 1162 SMART WD40_4 1067 1106 IPR001680 GO:0005515
Cla08g00153 1162 SMART WD40_4 1024 1063 IPR001680 GO:0005515
Cla08g00153 1162 SMART WD40_4 1118 1161 IPR001680 GO:0005515
Cla08g00153 1162 Gene3D - 813 1162 IPR015943 GO:0005515
Cla08g00153 1162 CDD AE_Prim_S 44 379 IPR014052 GO:0003896|GO:0006269
Cla08g00153 1162 PANTHER RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN 454 1162 IPR028598 GO:0042254
Cla08g00153 1162 SUPERFAMILY WD40 repeat-like 787 1160 IPR036322 GO:0005515
Cla08g00153 1162 ProSiteProfiles Trp-Asp (WD) repeats profile. 830 871 IPR001680 GO:0005515
Cla08g00153 1162 SMART BOP1NT_2 568 823 IPR012953 GO:0006364
Cla08g00153 1162 Hamap Ribosome biogenesis protein @gn(BOP1) [BOP1]. 477 1161 IPR028598 GO:0042254
Cla08g00153 1162 MobiDBLite consensus disorder prediction 501 557 - -
Cla08g00153 1162 Pfam BOP1NT (NUC169) domain 568 823 IPR012953 GO:0006364
Cla08g00153 1162 SUPERFAMILY Prim-pol domain 32 395 - -
Cla08g00153 1162 Pfam DNA primase small subunit 137 370 IPR002755 GO:0003896|GO:0006269
Cla08g00153 1162 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 830 867 - -
Cla08g00153 1162 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 36 389 IPR014052 GO:0003896|GO:0006269
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00153 K14824 ERB1, BOP1; ribosome biogenesis protein ERB1 - csv:101220511 1310.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00153 Cla-Chr8:2969811 Cla09g01016 Cla-Chr9:10689960 4.24E-42 dispersed
Cla08g00153 Cla-Chr8:2969811 Cla09g00656 Cla-Chr9:6239084 3.85E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00013 . 1 94 Core DNA Replication Machinery Family AT4G14700 75.5 1.5e-37 155.2
Cla08g00013 . 1 94 Core DNA Replication Machinery Family AT4G12620 78.7 2.4e-38 157.9
Cla08g01551 . 2 390 Core DNA Replication Machinery Family AT2G37560 60.7 1.9e-138 489.2
Cla07g00440 . 9 451 Core DNA Replication Machinery Family AT2G01120 55.2 2.0e-129 459.5
Cla06g00340 . 89 622 Core DNA Replication Machinery Family AT4G29910 58.2 9.2e-175 610.5
Cla11g00892 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 4.0e-94 341.7
Cla09g02206 . 68 839 Core DNA Replication Machinery Family AT1G79150 57.7 1.4e-235 813.1
Cla10g01241 . 8 946 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1346.6
Cla01g02393 . 83 595 Core DNA Replication Machinery Family AT5G46280 84.1 1.5e-249 859.0
Cla02g00495 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cla11g00330 . 963 1697 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cla01g02533 . 7 869 Core DNA Replication Machinery Family AT5G44635 65.0 0.0e+00 1080.1
Cla09g00472 . 45 763 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cla02g01918 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.6e-163 571.2
Cla02g01918 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.7e-143 505.8
Cla09g00820 . 323 915 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cla10g01954 . 12 826 Core DNA Replication Machinery Family AT3G09660 69.0 2.4e-309 1058.1
Cla09g01540 . 9 635 Core DNA Replication Machinery Family AT2G14050 79.5 4.4e-290 993.8
Cla09g01539 . 19 120 Core DNA Replication Machinery Family AT2G14050 74.5 2.6e-40 164.1
Cla02g01165 . 1909 2314 Core DNA Replication Machinery Family AT2G20980 51.4 6.2e-101 364.8
Cla09g00243 CCT,ECH 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.1e-72 270.0
Cla11g00591 . 1 184 Core DNA Replication Machinery Family AT1G19080 68.5 2.0e-70 262.3
Cla11g00591 . 1 184 Core DNA Replication Machinery Family AT3G55490 68.5 2.0e-70 262.3
Cla05g00156 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.6e-49 193.0
Cla02g01214 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1769.2
Cla04g01144 . 99 694 Core DNA Replication Machinery Family AT1G67630 54.7 5.5e-189 657.9
Cla06g00192 . 363 763 Core DNA Replication Machinery Family AT1G67320 65.3 3.5e-170 595.1
Cla08g00153 . 7 430 Core DNA Replication Machinery Family AT5G41880 65.5 1.6e-169 592.8
Cla01g01486 . 1 1033 Core DNA Replication Machinery Family AT5G63960 78.5 0.0e+00 1643.6
Cla10g01668 . 29 575 Core DNA Replication Machinery Family AT2G42120 60.5 4.1e-186 647.9
Cla06g00192 . 363 763 Core DNA Replication Machinery Family AT1G67320 65.3 3.5e-170 595.1
Cla01g00535 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.4e-37 151.4
Cla02g02143 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Cla09g02001 . 1 1737 Core DNA Replication Machinery Family AT1G08260 66.5 0.0e+00 2332.4
Cla02g02143 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Cla09g02001 . 1 1844 Core DNA Replication Machinery Family AT2G27120 64.0 0.0e+00 2351.2
Cla04g01237 . 530 980 Core DNA Replication Machinery Family AT5G22110 69.8 1.1e-182 636.7
Cla02g02185 . 228 973 Core DNA Replication Machinery Family AT5G22010 72.2 1.6e-301 1032.3
Cla10g00332 . 1 203 Core DNA Replication Machinery Family AT1G63160 91.6 2.0e-105 379.4
Cla04g00481 . 73 444 Core DNA Replication Machinery Family AT5G27740 76.3 1.1e-162 569.7
Cla11g01553 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 4.5e-153 537.7
Cla08g00608 . 1 412 Core DNA Replication Machinery Family AT1G77470 66.4 5.3e-147 517.7
Cla11g00142 . 26 587 Core DNA Replication Machinery Family AT2G06510 67.7 8.4e-238 820.1
Cla10g00108 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 1.0e-195 680.2
Cla06g01537 . 1 643 Core DNA Replication Machinery Family AT5G08020 66.1 4.1e-245 844.3
Cla10g00108 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 1.8e-227 786.2
Cla06g01537 . 1 638 Core DNA Replication Machinery Family AT5G61000 64.0 3.2e-237 818.1
Cla10g00108 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 3.0e-224 775.4
Cla03g01715 . 1 386 Core DNA Replication Machinery Family AT5G26680 78.5 4.7e-176 614.4
Cla07g01491 . 1 328 Core DNA Replication Machinery Family AT2G25100 60.7 1.0e-110 396.7
Cla02g02101 . 44 890 Core DNA Replication Machinery Family AT1G08130 62.1 7.1e-282 966.8
Cla02g02101 . 204 890 Core DNA Replication Machinery Family AT1G49250 60.3 9.2e-227 783.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003594 1 10 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 1 2 1 1 2 1 1 2 0 1 1 0 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00153 Cla_Chr08 FPKM 10.24735 12.11801 25.384739 28.097769 16.754023 16.507931 15.964221 3.958729 4.485027 4.203354