Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00173 ATGGCGATCTCCACCTCTAGACTTGGAAGAAGGCGTTGGATTGGGCAAAGAACATGGCGCAATCGATTCCCCTTCAGATTCTCTTCCAGACGACTCTTTCGTCTCACTATCCTATGCCTCGCTTTGATCGCAATTCTGCCTCCCATTTACTTCCATTTCAAGCTCAAGCGCTTTCAGCAGATGCAACAAAGACAGTGCAAATGGCTGAATGATCCTCCTCTTGTGTGTGCTCATGGGGGCGACTCATCCAAGGCCTTCCCCAACACTATGGATGCATATAGCATAGCTCTTCGTTCTCAAGCCAACTGCATTGAAGTTGATGTTTCTCGTTCTTCAGATGGGGTCTTATTTGCACTTCACGACAGTGTAAATACATACATGATCTTGTTTCCTGGCCCTGGGAGGCCACTATTCTACCTCATGCTTGTCAAGTGTCATGGAAGCATAAACATCCGAATTCTAGGAGTCTTGGCACCCAGTAGAAACGAGTTGGCAGTCAGACTAGTCTTTATCCCTAAGGTGGCACTCTCTTTGGCATCTTTTTACTTGCCACAGAATCTGTTCCTCATTTGTGGTACTAGAGACTGCTCTTCTGAGATGCCCTACAGACTCCCTATAAAAAATCTTGGTGCTGTTTATCAACACACTCATAAATTGCTGGATTTCAACATTCCTACAATTGAAGAAGCTTTGATGTTAATATCAAAATCAGTTCAGCAGGTGATTCTAGACGCAAAGGTTGGGCCACCGTCGTATGAAAATGGGCTTGCAAAAGATATCATTTCTGTTGTCGAGAAGACGCAATGTAAAAATTGTCTTGTTTGGGCGAAGAGTGATAGCTTAGCAAGGGACATAATCAGATTATCATCGGATATTAAGGTGGGGTATATTGTAATGATAGACCCATCTACGGGGGAACGAACCAACTTGCTGAGGATGAAAGGAGCCAAGGTGGTTGGTGTCTATCATCCGTTGATTGATGAAAATCTTATGCGAATACTGCACAGGAGAGAAAAAAAGGTTTATACATGGACAGTTGATGATATCGATTCAATGAAAAGAATGTTAGCTGAGGGAGTAGATGCTGTCGTTACAAGCAATCCGACATTACTTGGAAGTGTAATGCAAGATACCAGAACTACATGCCTTGAGAATGGTTTTTCATTTTCATCATGA 1176 43.11 MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRQCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDSVNTYMILFPGPGRPLFYLMLVKCHGSINIRILGVLAPSRNELAVRLVFIPKVALSLASFYLPQNLFLICGTRDCSSEMPYRLPIKNLGAVYQHTHKLLDFNIPTIEEALMLISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMIDPSTGERTNLLRMKGAKVVGVYHPLIDENLMRILHRREKKVYTWTVDDIDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3516591 3523351 + ClCG08G001730.2 Cla08g00173 277828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00173 391 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD4 206 390 IPR044236 -
Cla08g00173 391 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD4 10 121 IPR044236 -
Cla08g00173 391 CDD GDPD 75 367 - -
Cla08g00173 391 Gene3D Phosphatidylinositol (PI) phosphodiesterase 67 373 IPR017946 GO:0006629|GO:0008081
Cla08g00173 391 Pfam Glycerophosphoryl diester phosphodiesterase family 311 368 IPR030395 GO:0006629|GO:0008081
Cla08g00173 391 Pfam Glycerophosphoryl diester phosphodiesterase family 83 122 IPR030395 GO:0006629|GO:0008081
Cla08g00173 391 ProSiteProfiles GP-PDE domain profile. 73 375 IPR030395 GO:0006629|GO:0008081
Cla08g00173 391 SUPERFAMILY PLC-like phosphodiesterases 73 371 IPR017946 GO:0006629|GO:0008081
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00173 - - - bhj:120080329 415.616
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1742 Blo01g01684 . . . Bpe02g00257 . . Bma01g02451 . . . . . . . . . . . . . . . . Cla08g00173 . Cec08g0078 Cco08g0238 . Cmu08g0165 Cre08g0156 . . . . . . . Cme09g00119 . . Bda11g00919 . . . . . . . Cmo09g01209 . . . Car09g01078 . . Bhi06g00121 . . . . . . . . . . . . . Lsi08g00175 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005771 1 8 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00173 Cla_Chr08 FPKM 64.489372 68.960312 122.816284 126.634026 62.22459 45.801758 61.254604 131.454376 137.252106 140.344513