Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00174 ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCGGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTGTCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACAACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 42.59 MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPSTQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3527262 3530525 + ClCG08G001740.1 Cla08g00174 277829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00174 197 SMART ring_2 109 150 IPR001841 -
Cla08g00174 197 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 22 179 - -
Cla08g00174 197 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 22 179 - -
Cla08g00174 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
Cla08g00174 197 Pfam Ring finger domain 109 151 IPR001841 -
Cla08g00174 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cla08g00174 197 MobiDBLite consensus disorder prediction 171 187 - -
Cla08g00174 197 SUPERFAMILY RING/U-box 93 162 - -
Cla08g00174 197 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00175 Cla-Chr1:1751989 Cla08g00174 Cla-Chr8:3527262 6.65E-23 dispersed
Cla01g00245 Cla-Chr1:2467004 Cla08g00174 Cla-Chr8:3527262 2.13E-13 dispersed
Cla08g00174 Cla-Chr8:3527262 Cla06g00800 Cla-Chr6:11076724 1.21E-17 dispersed
Cla08g00174 Cla-Chr8:3527262 Cla06g00655 Cla-Chr6:8107040 3.12E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00174 K19039 - csv:101219324 348.591