Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g00174 | ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCGGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTGTCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACAACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA | 594 | 42.59 | MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPSTQACQHTTPPV | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3527262 | 3530525 | + | ClCG08G001740.1 | Cla08g00174 | 277829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g00174 | 197 | SMART | ring_2 | 109 | 150 | IPR001841 | - | |
Cla08g00174 | 197 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 22 | 179 | - | - | |
Cla08g00174 | 197 | PANTHER | RING-H2 FINGER PROTEIN ATL7-LIKE | 22 | 179 | - | - | |
Cla08g00174 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 156 | IPR013083 | - | |
Cla08g00174 | 197 | Pfam | Ring finger domain | 109 | 151 | IPR001841 | - | |
Cla08g00174 | 197 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 151 | IPR001841 | - | |
Cla08g00174 | 197 | MobiDBLite | consensus disorder prediction | 171 | 187 | - | - | |
Cla08g00174 | 197 | SUPERFAMILY | RING/U-box | 93 | 162 | - | - | |
Cla08g00174 | 197 | MobiDBLite | consensus disorder prediction | 171 | 197 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00175 | Cla-Chr1:1751989 | Cla08g00174 | Cla-Chr8:3527262 | 6.65E-23 | dispersed | |
Cla01g00245 | Cla-Chr1:2467004 | Cla08g00174 | Cla-Chr8:3527262 | 2.13E-13 | dispersed | |
Cla08g00174 | Cla-Chr8:3527262 | Cla06g00800 | Cla-Chr6:11076724 | 1.21E-17 | dispersed | |
Cla08g00174 | Cla-Chr8:3527262 | Cla06g00655 | Cla-Chr6:8107040 | 3.12E-18 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g00174 | K19039 | - | csv:101219324 | 348.591 |