Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00178 ATGGCACAGACTTGGTCGGCCCGTGGAGGAGTGAACCCAGGCGTCGAAGCACGCGTCGGCGTCGGCTGGGAGAAGGCACGGGTTTCGCGATTTCTTTCTGCGATCTCGCAAGACGACCAGAGATCTGGCGTCGGTTGGGAGGCTGAGTGTTGTCCGGTGGTTGAGGCGAGACGACCGGTGAAGGTCTGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAAAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAGCCTAATCCTGGCATGGGTAAGGATTTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 885 46.89 MAQTWSARGGVNPGVEARVGVGWEKARVSRFLSAISQDDQRSGVGWEAECCPVVEARRPVKVWSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPNPGMGKDFQPNKVDREALSLEWER 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3559896 3568078 - ClCG08G001780.1 Cla08g00178 277833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00178 294 Pfam Whirly transcription factor 118 252 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cla08g00178 294 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 64 294 - -
Cla08g00178 294 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 64 294 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cla08g00178 294 SUPERFAMILY ssDNA-binding transcriptional regulator domain 109 294 IPR009044 GO:0003677|GO:0006355
Cla08g00178 294 Gene3D Transcriptional Coactivator Pc4; Chain A 104 273 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00178 Cla-Chr8:3559896 Cla08g00894 Cla-Chr8:21408774 7.69E-37 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61510 PF08536 Whirly 5.50E-54 CL0609 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00178 - - csv:101219085 388.267