Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00181 ATGACTCCATCTAACTTGGCAAGTCAGTTTGGGGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCCGAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGAAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCACGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAGCTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGCGTAACCATGGCTCTTCCTGCACCAATCCCACATCGTTAG 855 51.11 MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3725374 3730084 + ClCG08G001810.1 Cla08g00181 277836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00181 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Cla08g00181 284 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Cla08g00181 284 Gene3D - 2 119 IPR012677 -
Cla08g00181 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Cla08g00181 284 PANTHER OS01G0876800 PROTEIN 1 279 - -
Cla08g00181 284 PANTHER BOULE-RELATED 1 279 IPR037366 GO:0003729
Cla08g00181 284 SMART rrm1_1 17 89 IPR000504 GO:0003723
Cla08g00181 284 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00181 - - - csv:101221767 479.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00108 Cla-Chr6:1165072 Cla08g00181 Cla-Chr8:3725374 1.79E-58 dispersed
Cla08g00181 Cla-Chr8:3725374 Cla08g00924 Cla-Chr8:21785447 2.69E-56 dispersed
Cla08g00181 Cla-Chr8:3725374 Cla11g01387 Cla-Chr11:27419356 1.36E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005770 1 3 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00181 Cla_Chr08 FPKM 143.548767 176.365097 64.777298 67.139603 92.582619 102.531677 95.579422 58.323353 64.02906 58.308262