Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00194 ATGGTTGATAGCTCACGTTATCCAAATCACTCAATCGGAGAGACCAACTTAAAGACCACATCTGCCACGTCCCCATACTCCACCAATCAAAACATTGCATTGGATTTCTCAGCTTATGAGCAAAATCACAAACCTGAATCCGACGTGGCATCCTCCACCGCCGCCGCCTCCCTTGGCGTCTCCGAAATGCTGAGAAATCCTCTCAGCTTCTCCGGTGCCTCCGCTAGGTCAGCTCCCTCTGCTTCTAGCCCAGCTACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCTGCCGCACCATCCAAGCCAAAGCCCTCTGCCGTCTCCCCAGTCAACGACGAGCTCGCCAAGTGGTATGGTCCGGACAGAAGGATTTTCTTGCCGGAAGGGCTGTTGGACCGATCGGAGATCCCTGAGTATTTGAACGGAGAAGTCCCCGGCGACTATGGTTACGATCCCTTTGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAATACCAAGCGTTTGAGTTGATTCATGCAAGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGAGCCAACTGCGGTCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAATACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCGGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATATTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTTCACCCCGGAGGGCCGTTCGACCCATTGGGGTTAGCAGACGACCCGGACCAAGCAGCGATTTTGAAGGTGAAGGAGATCAAGAATGGGAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA 1011 50.45 MVDSSRYPNHSIGETNLKTTSATSPYSTNQNIALDFSAYEQNHKPESDVASSTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKPSAVSPVNDELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3955913 3958634 - ClCG08G001920.2 Cla08g00194 277849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00194 336 MobiDBLite consensus disorder prediction 1 24 - -
Cla08g00194 336 SUPERFAMILY Chlorophyll a-b binding protein 117 326 - -
Cla08g00194 336 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 49 336 IPR001344 GO:0009765|GO:0016020
Cla08g00194 336 Gene3D Chlorophyll a/b binding protein domain 125 336 - -
Cla08g00194 336 Pfam Chlorophyll A-B binding protein 138 299 IPR022796 -
Cla08g00194 336 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 49 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02379 Cla-Chr1:37491657 Cla08g00194 Cla-Chr8:3955913 4.71E-66 dispersed
Cla08g00194 Cla-Chr8:3955913 Cla10g01121 Cla-Chr10:25634840 2.14E-66 dispersed
Cla08g00194 Cla-Chr8:3955913 Cla02g01804 Cla-Chr2:33078485 6.56E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00194 K08916 - csv:101218137 529.25