Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00207 ATGGTTGCTACAACGCTCCTCTCAGTCTTGCCTCAGCCTCATCCTCTCCGTTCTCAATTCTCAACGCTCCAATGTTTGCTGCAACGCTCGGATCCGTCTCCGCTTATTCCTTTCTCTCACAGTTCGCCTCCATTGATGCTTCTCACGCCCGTTCAACCTCGGCCTCTACTTCACACGCGCTTCTCTAAACGACCTTTATCTCCGCCGCCGGAATCAGTTCGACCTGCTCGGGTGAATGTGAATTTGCAGCAAATAATTCAGAGAAATAGGAACTGTTTGATCAGACATAGGAACTGGGCACAACGGTTTGTTGGTCTCAACAAGAATGCATCTACAAAAGCAGCTGTGATTACTGCAATGTCCTCAGCATCCGTGTGCATTGGGCCTGCTCTGGAGGTGCAAGAAATACGGGAGAGATCCAACAAGTGGCAATGGAACCAGTATTCTATAAACTATTTTGTTTCTCATTATCAACCTTCTCAACAGCAACCACAATCAAGTTCAAGTCCTCCTGTCGTTCTTTTAGTTCATGGCTTTGGAGCTTCTATTCCTCATTGGCGCAGGAATATTAGCACATTGTCTCAATATTCAACTGTCTATGCCATCGACCTTCTTGGCTTTGGTGCTTCCGATAAGCCTGCCGGGTTTGCATATACCATGGAAACATGGGCAGATTTGATATTAGATTTTGTGGATCAAGTCATTAAGAAGCCAACTGTGCTAGTGGGTAACTCAGTGGGAAGCCTTGCTTGCGTGATTGCTGCTTCAGATTCCAGTAGAAATCTAGTTCGAGGACTTGTGCTCTTAAACTGTGCTGGTGGTATGAACAATAAAGCAATTGTCGATGATTGGAGGATCAAACTGTTATTACCATTACTTTGGCTGTTCGATTTCTTATTGAACCAACGAATAATTGCTTCCGTGCTGTTTGAGCGTGTGAAAAAGCGAGATAGCTTGAGGAACATTTTGTCGTCCGTATATGGAAACAAGGAAAGTGTGGATGAAGATCTGATAGACATTATTATGGAACCAGCAAATGACGAAGGGGCGCTTGATGCTTTCGTTTCAATCGTTACAGGGCCACCAGGGCCAAGTCCGGTGCAACTAATGCCAAAAATTTCTGTGCCTGTTCTGATTTTGTGGGGAGATGAAGATCCATTCACGCCACTTGATGGCCCTGTTGGGAAGTACTTCAGGAAGTTAGGTATGGAAGTTCCAAATGTCAGTCTTTTTGTGTTGAAAGGAGTAGGGCATTGTCCCCATGATGATAGGCCTGAACTAGTGCATGAAAAGCTCCTTCCATGGTTGGCTCAGCTTCCTGCATTGTAA 1329 45.22 MVATTLLSVLPQPHPLRSQFSTLQCLLQRSDPSPLIPFSHSSPPLMLLTPVQPRPLLHTRFSKRPLSPPPESVRPARVNVNLQQIIQRNRNCLIRHRNWAQRFVGLNKNASTKAAVITAMSSASVCIGPALEVQEIRERSNKWQWNQYSINYFVSHYQPSQQQPQSSSSPPVVLLVHGFGASIPHWRRNISTLSQYSTVYAIDLLGFGASDKPAGFAYTMETWADLILDFVDQVIKKPTVLVGNSVGSLACVIAASDSSRNLVRGLVLLNCAGGMNNKAIVDDWRIKLLLPLLWLFDFLLNQRIIASVLFERVKKRDSLRNILSSVYGNKESVDEDLIDIIMEPANDEGALDAFVSIVTGPPGPSPVQLMPKISVPVLILWGDEDPFTPLDGPVGKYFRKLGMEVPNVSLFVLKGVGHCPHDDRPELVHEKLLPWLAQLPAL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4185622 4190564 + ClCG08G002000.1 Cla08g00207 277862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00207 442 Gene3D alpha/beta hydrolase 132 438 IPR029058 -
Cla08g00207 442 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 98 441 - -
Cla08g00207 442 Pfam Alpha/beta hydrolase family 173 429 IPR000073 -
Cla08g00207 442 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 98 441 - -
Cla08g00207 442 SUPERFAMILY alpha/beta-Hydrolases 139 436 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00207 - - - csv:101215106 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00798 Cla-Chr7:22389732 Cla08g00207 Cla-Chr8:4185622 3.27E-47 dispersed
Cla08g00207 Cla-Chr8:4185622 Cla09g00417 Cla-Chr9:3970387 2.91E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1795 . Blo12g00803 . Bda03g00369 . Bpe04g00332 Bma04g00347 . . . Cma01g00893 . Car01g00814 . . . . . . . . . . . Cla08g00207 . . . . . Cre08g0181 . . . . . . . . . . . . . . . . . Cmo01g00937 . . . . . . Cpe02g00973 . . . . . . . . . . . . . . Lsi08g00193 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005437 1 4 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00207 Cla_Chr08 FPKM 13.893785 15.750118 14.366222 14.692719 16.846189 16.204 16.405521 21.223562 19.850693 19.454231